Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0238
(326 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 119 5e-28
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 117 2e-27
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 29 0.56
At4g39480.1 68417.m05585 cytochrome P450 family protein contains... 28 1.3
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid... 27 3.0
At4g04920.1 68417.m00715 expressed protein 27 3.0
At2g20570.1 68415.m02402 golden2-like transcription factor (GLK1... 27 3.0
At4g08960.1 68417.m01476 phosphotyrosyl phosphatase activator (P... 26 5.2
At1g49840.1 68414.m05588 expressed protein contains Pfam profile... 26 5.2
At4g01970.1 68417.m00262 galactinol-raffinose galactosyltransfer... 26 6.8
At3g51740.1 68416.m05673 leucine-rich repeat transmembrane prote... 26 6.8
At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH) domain... 26 6.8
At5g45100.2 68418.m05534 expressed protein 25 9.0
At5g45100.1 68418.m05533 expressed protein 25 9.0
At5g42180.1 68418.m05134 peroxidase 64 (PER64) (P64) (PRXR4) ide... 25 9.0
At5g41950.1 68418.m05108 expressed protein 25 9.0
At5g26080.1 68418.m03103 proline-rich family protein contains pr... 25 9.0
At3g48560.1 68416.m05302 acetolactate synthase, chloroplast / ac... 25 9.0
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai... 25 9.0
At2g30240.1 68415.m03680 cation/hydrogen exchanger, putative (CH... 25 9.0
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 119 bits (286), Expect = 5e-28
Identities = 57/91 (62%), Positives = 69/91 (75%), Gaps = 2/91 (2%)
Frame = +2
Query: 59 MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 232
M+ + ARPLV++ + + T Q + LP V AP+RPD+VN VH +S NSRQPY VS
Sbjct: 1 MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60
Query: 233 KEAGHQTSAESWGTGRAVARIPRVRGGGTHR 325
K+AGHQTSAESWGTGRAV+RIPRV GGGTHR
Sbjct: 61 KKAGHQTSAESWGTGRAVSRIPRVPGGGTHR 91
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 117 bits (281), Expect = 2e-27
Identities = 57/88 (64%), Positives = 65/88 (73%), Gaps = 2/88 (2%)
Frame = +2
Query: 68 SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 241
+ ARPLV+V + T Q LP V AP+RPD+VN VH +S NSRQPY VSK+A
Sbjct: 5 AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64
Query: 242 GHQTSAESWGTGRAVARIPRVRGGGTHR 325
GHQTSAESWGTGRAV+RIPRV GGGTHR
Sbjct: 65 GHQTSAESWGTGRAVSRIPRVPGGGTHR 92
>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 497
Score = 29.5 bits (63), Expect = 0.56
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +2
Query: 83 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 229
LV +++ SE+++ PLPF K+P +PD++ H + NS+ C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397
>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 989
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 134 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 229
P+PF K+P +PD++ H + NSR +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 134 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 229
P+PF K+P +PD++ H + NS+ +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887
>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
[Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
Length = 324
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 58 NESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 195
N +I +PT S+ G S V + GAHT G + C+ F
Sbjct: 163 NSNIPAPTSSLSQLISSFSAVGLSTRDMVALSGAHTIGQSR-CTNF 207
>At4g04920.1 68417.m00715 expressed protein
Length = 1250
Score = 27.1 bits (57), Expect = 3.0
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 152 KAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAE-SWGTGRAVARIPRVRGG 313
K P D + + +S S S VS EA Q++A +WG+G RGG
Sbjct: 403 KKPSDQDSSDAISLSCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGG 457
>At2g20570.1 68415.m02402 golden2-like transcription factor (GLK1)
identical to golden2-like transcription factor
GI:13311003 from [Arabidopsis thaliana]; contains Pfam
profile: PF00249 Myb-like DNA-binding domain
Length = 420
Score = 27.1 bits (57), Expect = 3.0
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -1
Query: 203 WT*KREHH*PGPDVWAP*T-RTGGAWLHPAPSRSFLNTPTLKVGLP 69
WT KR H G D A RT WL PAP+ F P + V P
Sbjct: 221 WTRKR--HIYGVDTGANLNGRTKNGWLAPAPTLGFPPPPPVAVAPP 264
>At4g08960.1 68417.m01476 phosphotyrosyl phosphatase activator
(PTPA) family protein similar to Protein phosphatase 2A,
regulatory subunit B' (PP2A, subunit B', PR53 isoform)
(Phosphotyrosyl phosphatase activator) (PTPA)
(Swiss-Prot:Q28717) [Oryctolagus cuniculus]
Length = 392
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 315 PPPRTRGIRATARPVPHDSALV 250
PPP R IRA A +PH+S +
Sbjct: 55 PPPNYRPIRAPAINLPHNSQAI 76
>At1g49840.1 68414.m05588 expressed protein contains Pfam profile
PF04788: Protein of unknown function (DUF620)
Length = 494
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -3
Query: 309 PRTRGIRATARPVPHDSALVW*PASLLTQ*GC 214
PR+R + PH AL+W L+ GC
Sbjct: 26 PRSRSASPSRSTTPHMKALLWGRKKLIASSGC 57
>At4g01970.1 68417.m00262 galactinol-raffinose
galactosyltransferase, putative similar to
galactinol-raffinose galactosyltransferase GI:6634701
from [Vigna angularis]
Length = 807
Score = 25.8 bits (54), Expect = 6.8
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 238 GWSPNQCRIMGYRTC 282
GWSP + R GY+ C
Sbjct: 629 GWSPEEHRFKGYKEC 643
>At3g51740.1 68416.m05673 leucine-rich repeat transmembrane protein
kinase, putative brassinosteroid-insensitive protein
BRI1 - Arabidopsis thaliana, PIR:T09356
Length = 836
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 183 SLTRSGRMGALNTNGRGLAAPCTVSLFSEYTDT 85
SLT S R+ LN + L+ P VS+ YT T
Sbjct: 185 SLTESTRLYRLNLSFNSLSGPLPVSVARSYTLT 217
>At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related contains Pfam PF01417: ENTH domain. ENTH
(Epsin N-terminal homology) domain; similar to CLATHRIN
COAT ASSEMBLY PROTEIN AP180 - Mus musculus,
SWISSPROT:Q61548
Length = 599
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -1
Query: 122 PAPSRSFLNTPTLKVGLPIDSFRYFSEAIPPKY 24
PAPS + N + +P+D F E PP Y
Sbjct: 519 PAPSTANGNAGNINSPVPMDPFAASLEVAPPAY 551
>At5g45100.2 68418.m05534 expressed protein
Length = 267
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 220 GLPRVLGHRNVNIIDQVRTYGRLEHE 143
G P +G RN+ ID + ++ + E E
Sbjct: 11 GFPVTIGDRNLQYIDPINSFNKSESE 36
>At5g45100.1 68418.m05533 expressed protein
Length = 294
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 220 GLPRVLGHRNVNIIDQVRTYGRLEHE 143
G P +G RN+ ID + ++ + E E
Sbjct: 38 GFPVTIGDRNLQYIDPINSFNKSESE 63
>At5g42180.1 68418.m05134 peroxidase 64 (PER64) (P64) (PRXR4)
identical to SP|Q43872 Peroxidase 64 precursor (EC
1.11.1.7) (Atperox P64) (PRXR4) (ATP17a) {Arabidopsis
thaliana}
Length = 317
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 73 SPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 195
+PTF++ R+ G S V + G HT G CS F
Sbjct: 159 APTFNISQLRQNFGQRGLSMHDLVALSGGHTLGFAH-CSSF 198
>At5g41950.1 68418.m05108 expressed protein
Length = 565
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 99 EYTDTKGRATDRLISLL*RSYTSEIYTNSGDKD 1
+ D +GR+ R+++ R Y S I N D D
Sbjct: 192 QVNDEEGRSRQRVLAFAARKYASAIERNPDDHD 224
>At5g26080.1 68418.m03103 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 141
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = +1
Query: 244 SPNQCRIMGYRTCCRPNSACPWWW 315
+P + YR P S PWWW
Sbjct: 116 APQAQKAFYYRQSPPPPSGQPWWW 139
>At3g48560.1 68416.m05302 acetolactate synthase, chloroplast /
acetohydroxy-acid synthase (ALS) nearly identical to
SP|P17597 Acetolactate synthase, chloroplast precursor
(EC 2.2.1.6, formerly EC 4.1.3.18) (Acetohydroxy-acid
synthase) (ALS) {Arabidopsis thaliana}
Length = 670
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 62 SFRYFSEAIPPKYTL 18
SF+ F EAIPP+Y +
Sbjct: 454 SFKTFGEAIPPQYAI 468
>At3g19840.1 68416.m02513 FF domain-containing protein / WW
domain-containing protein weak similarity to
transcription factor CA150b [Mus musculus] GI:6329166;
contains Pfam profiles PF01846: FF domain, PF00397: WW
domain
Length = 743
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 325 PMSTTTTDTRNSGDSTSGTP*FGTGLVTSLLAHAVG 218
P+S+T T NSG +T TP +G T + A G
Sbjct: 308 PVSSTITSEANSGKTTEVTPSGESGNSTGKVKDAPG 343
>At2g30240.1 68415.m03680 cation/hydrogen exchanger, putative
(CHX13) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 831
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -3
Query: 129 AAPCTVSLFSEYTDTKGR 76
AAPC+V++F + +T+GR
Sbjct: 617 AAPCSVAIFIDRGETEGR 634
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,599,004
Number of Sequences: 28952
Number of extensions: 155985
Number of successful extensions: 506
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 370553816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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