Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0237
         (320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    27   0.93 
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   1.2  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    25   2.8  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    24   5.0  
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe...    24   5.0  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    24   5.0  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    24   5.0  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    24   6.6  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   6.6  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    23   8.7  

>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 234 SGPTSALQIFLYSHMHCIGVIQFTLPHRTVL 142
           SGP+ AL+IFL+    C  ++Q+ + +  +L
Sbjct: 194 SGPSMALRIFLHFLRSCFYLVQYIVAYIAML 224


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 225  TSALQIFLYSHMHCIGVIQFTLPHRTVL 142
            ++ +Q+ L S  HC+ V  FT+ +  VL
Sbjct: 1629 SAGIQLILISDAHCLPVFDFTIENFNVL 1656


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 186 CIGVIQFTLPHRTVL*FPKK*LLRRCN 106
           C+ +  F  P+  +L FP   +LR+CN
Sbjct: 173 CMALTVFINPNALLLFFPSYLILRKCN 199


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -1

Query: 278  SHELKEWRKRSFRLVQAQPLLCRFFCIVTCIVLALSNL 165
            SHEL E    ++RLV+A  +L    C  + I LAL+ +
Sbjct: 997  SHELHE----AYRLVKANKILEAQICFRSIIYLALTTV 1030


>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -1

Query: 239 LVQAQPLLCRFFCIVTCIVLALSNLLFRIEQ 147
           L+ A+PL+  F  + +C+++  S  ++ IE+
Sbjct: 217 LITAKPLISYFNLLTSCLIIFPSIWIYAIEK 247


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 317  YARVLGKKSWSHLSHELKEW 258
            Y   LG+KS  H   ELK W
Sbjct: 1849 YKAKLGEKSHLHYDKELKRW 1868


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 195 DYTKKSAEQRLGLNKPKRPLTPFFK 269
           DYT    E R  ++  K PL PF K
Sbjct: 472 DYTHFKEEVRKIIDSSKEPLIPFLK 496


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 124 LFFRELQDCSMRKSKLDNAN 183
           L+  + +DCS+R  +L N+N
Sbjct: 300 LWMEKCEDCSLRLKELQNSN 319


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 183  YNACDYTKKSAEQRLGLNKPKRPLTPFFK 269
            YN  DY + S     GL +  R LT +FK
Sbjct: 1396 YNISDYRRLSVAGLEGLGRLLRLLTNYFK 1424


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 104 QLQRLSNYFLGNYKTVLCGRVNWITPIQCM 193
           QLQ L   FL  Y  V+C     I+   CM
Sbjct: 220 QLQLLRVIFLSTYSLVVCNSEMAISWFNCM 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,333,527
Number of Sequences: 5004
Number of extensions: 24149
Number of successful extensions: 58
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)