Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0237
(320 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0814 + 28266590-28266615,28266780-28266860,28266986-282670... 37 0.003
09_06_0203 + 21555747-21555805,21555862-21555939,21556034-215560... 31 0.15
01_06_0175 + 27229878-27230056,27231102-27231159,27231230-272312... 29 0.62
05_07_0187 + 28267022-28267528 27 2.5
02_02_0372 + 9522751-9522964,9523043-9523255,9523471-9523555,952... 27 2.5
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 27 3.3
07_01_0559 + 4151054-4151178,4151306-4153018,4153121-4153412,415... 27 4.3
02_05_0261 + 27243898-27243938,27244068-27244157,27244293-272443... 27 4.3
11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,361... 26 5.7
10_08_0225 - 15995436-15995555,15995655-15995735,15995813-159959... 26 7.6
08_01_0469 - 4127950-4127988,4127989-4128264,4128845-4130861,413... 26 7.6
08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492 26 7.6
06_03_1050 + 27211019-27211660 26 7.6
06_03_0674 + 23422004-23422552,23423295-23423369,23424360-234244... 26 7.6
05_04_0210 + 19082778-19082940,19083806-19083875,19084172-190842... 26 7.6
02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580 26 7.6
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 26 7.6
>04_04_0814 +
28266590-28266615,28266780-28266860,28266986-28267043,
28267143-28267187,28268653-28268721,28268821-28268931,
28269038-28269046
Length = 132
Score = 37.1 bits (82), Expect = 0.003
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +3
Query: 228 GLNKPKRPLTPFFKFM*QMRPALLAKNP 311
G KPKR LTPFF F+ + RP + K+P
Sbjct: 21 GAGKPKRGLTPFFAFLAEFRPQYMEKHP 48
>09_06_0203 +
21555747-21555805,21555862-21555939,21556034-21556091,
21556191-21556235,21556514-21556549,21556855-21556935,
21557016-21557087,21557184-21557195
Length = 146
Score = 31.5 bits (68), Expect = 0.15
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGI 317
NKPKRP + FF FM Q R K+P +
Sbjct: 33 NKPKRPPSAFFVFMEQFRKDYKEKHPNV 60
>01_06_0175 +
27229878-27230056,27231102-27231159,27231230-27231274,
27232711-27232791,27232884-27232922
Length = 133
Score = 29.5 bits (63), Expect = 0.62
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 201 TKKSAEQRLGLNKPKRPLTPFFKFM*QMRPALLAKNPGI 317
++K + + +PK+P T FF FM R +NP +
Sbjct: 36 SRKKGQPLVDRRRPKKPPTAFFYFMEDFRKTYKEENPSV 74
>05_07_0187 + 28267022-28267528
Length = 168
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 169 LDNANTMHVTIQKNLQSRGWA*TSLNDL 252
L+ A TM+ T+ +Q RGWA LN L
Sbjct: 34 LEEAITMYRTLDDAVQFRGWACPQLNKL 61
>02_02_0372 +
9522751-9522964,9523043-9523255,9523471-9523555,
9524373-9524448,9524974-9525150,9525473-9525566,
9526357-9526466,9526568-9526657,9526752-9526832,
9528468-9529277,9530777-9530896
Length = 689
Score = 27.5 bits (58), Expect = 2.5
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +1
Query: 148 CSMRKSKLDNANTMHVTIQKNLQSRGWA*TSLNDLLRHSLSSCDKCDQLFLPRTLAY 318
C + ++ +DNA +M + + G+A L L H++ D LFL R LAY
Sbjct: 300 CRLTRAFIDNACSMVLKKSLTIMEHGYAVIDLEKLDPHNV------DDLFLSRYLAY 350
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGI 317
+KPK+P++ +F + Q R AL+A+ +
Sbjct: 283 SKPKQPMSAYFVYTQQRRAALVAEKKNV 310
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N+PK+P + F F + R L + PG++
Sbjct: 412 NRPKKPASSFLLFSKEARRQLAEERPGVA 440
>07_01_0559 +
4151054-4151178,4151306-4153018,4153121-4153412,
4154327-4154636,4155041-4155261
Length = 886
Score = 26.6 bits (56), Expect = 4.3
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +1
Query: 130 FRELQDCSMRKSKLDNANTMHVTIQKNLQSRGWA*TSLN--DLLRHSLSSCDKCDQLFLP 303
FR L + +R+ L +A T+ + + W D++ L+SC KC + F P
Sbjct: 92 FRGLGEAKLRQRSLHSAWRCATTVHEKIVFGAWLRYEKRGEDIISDVLASCRKCCKEFGP 151
Query: 304 RTLA 315
+A
Sbjct: 152 LDVA 155
>02_05_0261 +
27243898-27243938,27244068-27244157,27244293-27244350,
27244441-27244485,27244778-27244855,27244940-27245041,
27245150-27245173
Length = 145
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 237 KPKRPLTPFFKFM*QMRPALLAKNP 311
KPKRP + FF FM + R A +P
Sbjct: 32 KPKRPPSAFFVFMSEFRQEYQAAHP 56
>11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,
3611984-3612217,3614113-3614138,3614446-3614633,
3615707-3617670,3617938-3618423,3618527-3618894
Length = 2207
Score = 26.2 bits (55), Expect = 5.7
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 139 LQDCSMRKSKLDNANTMHVTIQKNLQSRGWA*TSLNDLLRHSLSSCDKCDQLFL 300
L C + +KLD A + K L S + L + +LS+CD ++L L
Sbjct: 1774 LTRCMLSFNKLDGALPTEIGNAKQLGSLHLSANKLTGHIPSTLSNCDSLEELHL 1827
>10_08_0225 -
15995436-15995555,15995655-15995735,15995813-15995956,
15996305-15996386,15996479-15996561,15996655-15996759,
15996869-15996907,15997004-15997060,15997701-15997769,
15997959-15998069,15998382-15998564
Length = 357
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 198 YTKKSAEQRLGLNKPKRPLTPF 263
+ KK+ +Q+ + K K+P TPF
Sbjct: 214 FKKKNVKQKKPITKEKKPYTPF 235
>08_01_0469 -
4127950-4127988,4127989-4128264,4128845-4130861,
4131134-4131987
Length = 1061
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 311 RVLGKKSWSHLSHELKEW 258
R +GK W HL EL+ W
Sbjct: 48 RKIGKVPWEHLDDELRLW 65
>08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492
Length = 1141
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 317 YARVLGKKSWSHLSHELKE 261
Y R LGK SW ++ ELK+
Sbjct: 110 YFRKLGKTSWHKIARELKD 128
>06_03_1050 + 27211019-27211660
Length = 213
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 208 NLQSRGWA*TSLNDLLRHSLSSCDKCDQLFL 300
NLQ G A T D+ H+LSS + D+L L
Sbjct: 163 NLQQAGGAGTGAGDMFSHALSSAE--DRLLL 191
>06_03_0674 +
23422004-23422552,23423295-23423369,23424360-23424443,
23424749-23424991,23425348-23425515,23425608-23425727,
23426372-23427016
Length = 627
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 86 SMTTYTQLQRLSNYFLGNYKTVLCGRVNWITPI 184
S T ++QRL++ FL NY + GRV T +
Sbjct: 309 SATFPPEIQRLASDFLSNYIFITVGRVGSSTDL 341
>05_04_0210 +
19082778-19082940,19083806-19083875,19084172-19084295,
19084442-19084897
Length = 270
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 302 GKKSWSHLSHEL-KEWRKRSFRLVQAQPLLCRFFCIVTCIVLALS 171
G+ +WSH SH + + WR R+ + + I T ++L+ S
Sbjct: 178 GRSTWSHQSHSVGRFWRATVSRVAEKEQEGGDIISIRTAVMLSTS 222
>02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580
Length = 726
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = -3
Query: 237 CSGPTSALQIFLYSHMHCIGVIQFTLPHRTVL*FPK 130
CSGP HM C + T H+ V FPK
Sbjct: 243 CSGPVRCHSCLEAGHMSCFCATRPTKAHQPVGKFPK 278
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 204 KKSAEQRLGLNKPKRPLTPFFKFM*QMRPALLAKNPGI 317
K+ +++ N PKR +TPF F R + NP +
Sbjct: 587 KRKPKKKKDPNAPKRAMTPFMYFSMAERGNMKNNNPDL 624
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,842,716
Number of Sequences: 37544
Number of extensions: 130918
Number of successful extensions: 267
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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