Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0237
         (320 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)                     29   0.64 
SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.9  
SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)               28   1.9  
SB_6883| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   1.9  
SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22)                27   2.6  
SB_58950| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.4  
SB_54321| Best HMM Match : Keratin_B2 (HMM E-Value=2.7)                27   3.4  
SB_31961| Best HMM Match : EGF (HMM E-Value=0)                         27   4.5  
SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.9  
SB_50632| Best HMM Match : ShTK (HMM E-Value=0.0091)                   26   5.9  

>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
          Length = 783

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 204 KKSAEQRLGLNKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
           KK  +++   N PKR ++ +  ++   R  +  KNPGIS
Sbjct: 530 KKGGKKKKDPNAPKRAMSAYMLWLNDTRQEIKDKNPGIS 568


>SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 204 KKSAEQRLGLNKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
           KK  +Q    NKPKR L+ +F F+   R  +   NP  S
Sbjct: 90  KKRKKQTKDPNKPKRCLSAYFHFINLKRDDVKKDNPNAS 128


>SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)
          Length = 523

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 204 KKSAEQRLGLNKPKRPLTPFFKFM*QMRPALLAKNPGI 317
           +K  +    +N PK PLT + +F+ + R  + ++NP +
Sbjct: 165 RKRKKAHKDVNAPKAPLTGYVRFLNEHREKVRSENPDL 202


>SB_6883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 237 CSGPTSALQIFLYSHMHCIGVIQFT 163
           C+  T+ L +FL S MHC+  +Q +
Sbjct: 435 CTAYTATLTVFLASTMHCLTTLQLS 459


>SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22)
          Length = 299

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGI 317
           N+PK PLT +F++  + R  L  K P +
Sbjct: 150 NQPKMPLTSYFRYCQKHRAKLAKKYPNL 177


>SB_58950| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 513

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -1

Query: 242 RLVQAQPLLCRFFCIVTCIVLALSNLLFRIEQSCNSLKNNY 120
           ++V A+   CR   ++ CIV  L +  F   Q C  + + Y
Sbjct: 365 QMVNARMNFCRDLLVLLCIVERLESRAFTSPQRCQDISSLY 405


>SB_54321| Best HMM Match : Keratin_B2 (HMM E-Value=2.7)
          Length = 519

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 290 WSHLSHELKEWRKRSFRLVQAQPLLCRFFCIVTCIV 183
           W H+    +E +K + +L+  +  + R+  +VTC V
Sbjct: 475 WQHMLRRFREMQKEAQQLLAGRFFVNRYLLLVTCHV 510


>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2813

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/42 (28%), Positives = 26/42 (61%)
 Frame = +1

Query: 151 SMRKSKLDNANTMHVTIQKNLQSRGWA*TSLNDLLRHSLSSC 276
           S+R S++D  +T   ++ +  ++ G   + +ND++R  LS+C
Sbjct: 405 SIRNSRVD-VHTDSTSLLRTWENEGGRVSRINDIMREILSNC 445


>SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1130

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 217 SRGWA*TSLNDLLRHSLSSCDKCDQ 291
           SRG+  T  + +L+H   SC+ C+Q
Sbjct: 575 SRGFCNTRADFMLKHCQKSCNTCEQ 599


>SB_50632| Best HMM Match : ShTK (HMM E-Value=0.0091)
          Length = 566

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = -1

Query: 257 RKRSFRLVQAQPLLCRFFCIVTCIVLALSNLLF 159
           R++   +   Q ++CRF  ++ C+   LS+ ++
Sbjct: 466 RRKKKIMASFQTMVCRFLIVIVCVQYVLSSSVY 498


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,506,954
Number of Sequences: 59808
Number of extensions: 168459
Number of successful extensions: 369
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 425519554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)