Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0237
(320 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y10043-1|CAA71143.1| 200|Homo sapiens high mobility group prote... 36 0.027
BC070482-1|AAH70482.1| 200|Homo sapiens HMGB3 protein protein. 36 0.027
BC103851-1|AAI03852.1| 130|Homo sapiens HMG4L protein protein. 34 0.083
BC103850-1|AAI03851.1| 130|Homo sapiens HMG4L protein protein. 34 0.083
BC103849-1|AAI03850.1| 130|Homo sapiens HMG4L protein protein. 34 0.083
Z17240-1|CAA78938.1| 186|Homo sapiens HMG2B protein. 32 0.33
X62534-1|CAA44395.1| 209|Homo sapiens HMG-2 protein. 32 0.33
X12597-1|CAA31110.1| 215|Homo sapiens protein ( Human mRNA for ... 32 0.33
U51677-1|AAB08987.1| 215|Homo sapiens non-histone chromatin pro... 32 0.33
M83665-1|AAA58659.1| 209|Homo sapiens high mobility group 2 pro... 32 0.33
EU012027-1|ABS29271.1| 215|Homo sapiens high-mobility group box... 32 0.33
EF157968-1|ABM47301.1| 215|Homo sapiens high mobility group box... 32 0.33
D63874-1|BAA09924.1| 215|Homo sapiens HMG-1 protein. 32 0.33
CR456863-1|CAG33144.1| 215|Homo sapiens HMGB1 protein. 32 0.33
BT020159-1|AAV38961.1| 215|Homo sapiens high-mobility group box... 32 0.33
BT019783-1|AAV38586.1| 208|Homo sapiens high-mobility group box... 32 0.33
BT019782-1|AAV38585.1| 209|Homo sapiens high-mobility group box... 32 0.33
BT006940-1|AAP35586.1| 215|Homo sapiens high-mobility group box... 32 0.33
BC141844-1|AAI41845.1| 215|Homo sapiens high-mobility group box... 32 0.33
BC100019-1|AAI00020.1| 209|Homo sapiens HMGB2 protein protein. 32 0.33
BC067732-1|AAH67732.1| 215|Homo sapiens high-mobility group box... 32 0.33
BC066889-1|AAH66889.1| 215|Homo sapiens high-mobility group box... 32 0.33
BC030981-1|AAH30981.1| 215|Homo sapiens high-mobility group box... 32 0.33
BC003378-1|AAH03378.1| 215|Homo sapiens high-mobility group box... 32 0.33
BC001063-1|AAH01063.1| 209|Homo sapiens high-mobility group box... 32 0.33
AY377859-1|AAQ91389.1| 215|Homo sapiens high mobility group pro... 32 0.33
AL353648-3|CAI15603.1| 158|Homo sapiens high-mobility group box... 32 0.33
AL353648-2|CAI15601.1| 162|Homo sapiens high-mobility group box... 32 0.33
AL353648-1|CAI15600.1| 215|Homo sapiens high-mobility group box... 32 0.33
AB208998-1|BAD92235.1| 176|Homo sapiens high-mobility group box... 32 0.33
L79988-1|AAL77438.1| 403|Homo sapiens nuclear autoantigen protein. 31 0.58
AF076675-2|AAF39781.1| 181|Homo sapiens SP100-HMG protein. 31 0.58
AF056322-1|AAC39790.1| 879|Homo sapiens SP100-HMG nuclear autoa... 31 0.58
AC010149-1|AAY14879.1| 843|Homo sapiens unknown protein. 31 0.58
BT006716-1|AAP35362.1| 347|Homo sapiens high-mobility group 20A... 30 1.8
BC021959-1|AAH21959.1| 347|Homo sapiens high-mobility group 20A... 30 1.8
AL355737-1|CAB90816.1| 347|Homo sapiens HMG20A protein. 30 1.8
AK223100-1|BAD96820.1| 347|Homo sapiens high-mobility group 20A... 30 1.8
AK001601-1|BAA91782.1| 347|Homo sapiens protein ( Homo sapiens ... 30 1.8
AF146222-1|AAF66706.1| 347|Homo sapiens HMG domain protein HMGX... 30 1.8
X56687-1|CAA40016.1| 727|Homo sapiens autoantigen NOR-90 protein. 28 5.4
X53461-1|CAA37548.1| 764|Homo sapiens protein ( Human mRNA for ... 28 5.4
X53390-1|CAA37469.1| 764|Homo sapiens protein ( Human mRNA for ... 28 5.4
L08048-1|AAA64970.1| 216|Homo sapiens HMG-1 protein. 28 5.4
BC042297-1|AAH42297.1| 727|Homo sapiens upstream binding transc... 28 5.4
BC031423-1|AAH31423.1| 313|Homo sapiens UBTF protein protein. 28 5.4
AJ308590-1|CAC34632.1| 158|Homo sapiens upstream binding transc... 28 5.4
Z95115-3|CAB62951.1| 211|Homo sapiens high-mobility group (nonh... 28 7.2
X57500-1|CAA40736.1| 628|Homo sapiens nuclear factor IV protein. 28 7.2
M30938-1|AAA36154.1| 732|Homo sapiens protein ( Human Ku (p70/p... 28 7.2
J04977-1|AAA59475.1| 732|Homo sapiens G22P1 protein. 28 7.2
DQ787434-1|ABG46942.1| 732|Homo sapiens X-ray repair complement... 28 7.2
BC095442-1|AAH95442.1| 732|Homo sapiens X-ray repair complement... 28 7.2
BC019027-1|AAH19027.1| 732|Homo sapiens X-ray repair complement... 28 7.2
AK222603-1|BAD96323.1| 732|Homo sapiens ATP-dependent DNA helic... 27 9.5
>Y10043-1|CAA71143.1| 200|Homo sapiens high mobility group protein
2a protein.
Length = 200
Score = 35.9 bits (79), Expect = 0.027
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 207 KSAEQRLGLNKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
K +++ N PKRP + FF F + RP + + NPGIS
Sbjct: 82 KGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS 119
>BC070482-1|AAH70482.1| 200|Homo sapiens HMGB3 protein protein.
Length = 200
Score = 35.9 bits (79), Expect = 0.027
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 207 KSAEQRLGLNKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
K +++ N PKRP + FF F + RP + + NPGIS
Sbjct: 82 KGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS 119
>BC103851-1|AAI03852.1| 130|Homo sapiens HMG4L protein protein.
Length = 130
Score = 34.3 bits (75), Expect = 0.083
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKRPL+ FF F + P + + NPGIS
Sbjct: 27 NAPKRPLSGFFLFCSEFCPKIKSTNPGIS 55
>BC103850-1|AAI03851.1| 130|Homo sapiens HMG4L protein protein.
Length = 130
Score = 34.3 bits (75), Expect = 0.083
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKRPL+ FF F + P + + NPGIS
Sbjct: 27 NAPKRPLSGFFLFCSEFCPKIKSTNPGIS 55
>BC103849-1|AAI03850.1| 130|Homo sapiens HMG4L protein protein.
Length = 130
Score = 34.3 bits (75), Expect = 0.083
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKRPL+ FF F + P + + NPGIS
Sbjct: 27 NAPKRPLSGFFLFCSEFCPKIKSTNPGIS 55
>Z17240-1|CAA78938.1| 186|Homo sapiens HMG2B protein.
Length = 186
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKRP + FF F + RP + +++PG+S
Sbjct: 70 NAPKRPPSAFFLFCSEHRPKIKSEHPGLS 98
>X62534-1|CAA44395.1| 209|Homo sapiens HMG-2 protein.
Length = 209
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKRP + FF F + RP + +++PG+S
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGLS 121
>X12597-1|CAA31110.1| 215|Homo sapiens protein ( Human mRNA for
high mobility group-1 protein (HMG-1). ).
Length = 215
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKRP + FF F + RP + ++PG+S
Sbjct: 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLS 121
>U51677-1|AAB08987.1| 215|Homo sapiens non-histone chromatin
protein HMG1 protein.
Length = 215
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKRP + FF F + RP + ++PG+S
Sbjct: 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLS 121
>M83665-1|AAA58659.1| 209|Homo sapiens high mobility group 2
protein protein.
Length = 209
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKRP + FF F + RP + +++PG+S
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGLS 121
>EU012027-1|ABS29271.1| 215|Homo sapiens high-mobility group box 1
protein.
Length = 215
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKRP + FF F + RP + ++PG+S
Sbjct: 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLS 121
>EF157968-1|ABM47301.1| 215|Homo sapiens high mobility group box 1
protein protein.
Length = 215
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKRP + FF F + RP + ++PG+S
Sbjct: 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLS 121
>D63874-1|BAA09924.1| 215|Homo sapiens HMG-1 protein.
Length = 215
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKRP + FF F + RP + ++PG+S
Sbjct: 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLS 121
>CR456863-1|CAG33144.1| 215|Homo sapiens HMGB1 protein.
Length = 215
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKRP + FF F + RP + ++PG+S
Sbjct: 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLS 121
>BT020159-1|AAV38961.1| 215|Homo sapiens high-mobility group box 1
protein.
Length = 215
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKRP + FF F + RP + ++PG+S
Sbjct: 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLS 121
>BT019783-1|AAV38586.1| 208|Homo sapiens high-mobility group box 2
protein.
Length = 208
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKRP + FF F + RP + +++PG+S
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGLS 121
>BT019782-1|AAV38585.1| 209|Homo sapiens high-mobility group box 2
protein.
Length = 209
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKRP + FF F + RP + +++PG+S
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGLS 121
>BT006940-1|AAP35586.1| 215|Homo sapiens high-mobility group box 1
protein.
Length = 215
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKRP + FF F + RP + ++PG+S
Sbjct: 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLS 121
>BC141844-1|AAI41845.1| 215|Homo sapiens high-mobility group box 1
protein.
Length = 215
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKRP + FF F + RP + ++PG+S
Sbjct: 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLS 121
>BC100019-1|AAI00020.1| 209|Homo sapiens HMGB2 protein protein.
Length = 209
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKRP + FF F + RP + +++PG+S
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGLS 121
>BC067732-1|AAH67732.1| 215|Homo sapiens high-mobility group box 1
protein.
Length = 215
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKRP + FF F + RP + ++PG+S
Sbjct: 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLS 121
>BC066889-1|AAH66889.1| 215|Homo sapiens high-mobility group box 1
protein.
Length = 215
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKRP + FF F + RP + ++PG+S
Sbjct: 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLS 121
>BC030981-1|AAH30981.1| 215|Homo sapiens high-mobility group box 1
protein.
Length = 215
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKRP + FF F + RP + ++PG+S
Sbjct: 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLS 121
>BC003378-1|AAH03378.1| 215|Homo sapiens high-mobility group box 1
protein.
Length = 215
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKRP + FF F + RP + ++PG+S
Sbjct: 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLS 121
>BC001063-1|AAH01063.1| 209|Homo sapiens high-mobility group box 2
protein.
Length = 209
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKRP + FF F + RP + +++PG+S
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGLS 121
>AY377859-1|AAQ91389.1| 215|Homo sapiens high mobility group
protein 1 protein.
Length = 215
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKRP + FF F + RP + ++PG+S
Sbjct: 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLS 121
>AL353648-3|CAI15603.1| 158|Homo sapiens high-mobility group box 1
protein.
Length = 158
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKRP + FF F + RP + ++PG+S
Sbjct: 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLS 121
>AL353648-2|CAI15601.1| 162|Homo sapiens high-mobility group box 1
protein.
Length = 162
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKRP + FF F + RP + ++PG+S
Sbjct: 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLS 121
>AL353648-1|CAI15600.1| 215|Homo sapiens high-mobility group box 1
protein.
Length = 215
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKRP + FF F + RP + ++PG+S
Sbjct: 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLS 121
>AB208998-1|BAD92235.1| 176|Homo sapiens high-mobility group box 1
variant protein.
Length = 176
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKRP + FF F + RP + ++PG+S
Sbjct: 95 NAPKRPPSAFFLFCSEYRPKIKGEHPGLS 123
>L79988-1|AAL77438.1| 403|Homo sapiens nuclear autoantigen protein.
Length = 403
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKRP FF F + RP + ++PG+S
Sbjct: 291 NAPKRPPLAFFLFCSEYRPKIKGEHPGLS 319
>AF076675-2|AAF39781.1| 181|Homo sapiens SP100-HMG protein.
Length = 181
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKRP FF F + RP + ++PG+S
Sbjct: 69 NAPKRPPLAFFLFCSEYRPKIKGEHPGLS 97
>AF056322-1|AAC39790.1| 879|Homo sapiens SP100-HMG nuclear
autoantigen protein.
Length = 879
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKRP FF F + RP + ++PG+S
Sbjct: 767 NAPKRPPLAFFLFCSEYRPKIKGEHPGLS 795
>AC010149-1|AAY14879.1| 843|Homo sapiens unknown protein.
Length = 843
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKRP FF F + RP + ++PG+S
Sbjct: 731 NAPKRPPLAFFLFCSEYRPKIKGEHPGLS 759
>BT006716-1|AAP35362.1| 347|Homo sapiens high-mobility group 20A
protein.
Length = 347
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGI 317
N PK PLT + +FM + R L AK P +
Sbjct: 101 NAPKSPLTGYVRFMNERREQLRAKRPEV 128
>BC021959-1|AAH21959.1| 347|Homo sapiens high-mobility group 20A
protein.
Length = 347
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGI 317
N PK PLT + +FM + R L AK P +
Sbjct: 101 NAPKSPLTGYVRFMNERREQLRAKRPEV 128
>AL355737-1|CAB90816.1| 347|Homo sapiens HMG20A protein.
Length = 347
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGI 317
N PK PLT + +FM + R L AK P +
Sbjct: 101 NAPKSPLTGYVRFMNERREQLRAKRPEV 128
>AK223100-1|BAD96820.1| 347|Homo sapiens high-mobility group 20A
variant protein.
Length = 347
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGI 317
N PK PLT + +FM + R L AK P +
Sbjct: 101 NAPKSPLTGYVRFMNERREQLRAKRPEV 128
>AK001601-1|BAA91782.1| 347|Homo sapiens protein ( Homo sapiens
cDNA FLJ10739 fis, clone NT2RP3001472, weakly similar to
NONHISTONE CHROMOSOMAL PROTEIN 6A. ).
Length = 347
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGI 317
N PK PLT + +FM + R L AK P +
Sbjct: 101 NAPKSPLTGYVRFMNERREQLRAKRPEV 128
>AF146222-1|AAF66706.1| 347|Homo sapiens HMG domain protein HMGX1
protein.
Length = 347
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGI 317
N PK PLT + +FM + R L AK P +
Sbjct: 101 NAPKSPLTGYVRFMNERREQLRAKRPEV 128
>X56687-1|CAA40016.1| 727|Homo sapiens autoantigen NOR-90 protein.
Length = 727
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 240 PKRPLTPFFKFM*QMRPALLAKNPGIS 320
PK+PLTP+F+F + R +P +S
Sbjct: 112 PKKPLTPYFRFFMEKRAKYAKLHPEMS 138
>X53461-1|CAA37548.1| 764|Homo sapiens protein ( Human mRNA for
upstream binding factor (hUBF). ).
Length = 764
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 240 PKRPLTPFFKFM*QMRPALLAKNPGIS 320
PK+PLTP+F+F + R +P +S
Sbjct: 112 PKKPLTPYFRFFMEKRAKYAKLHPEMS 138
>X53390-1|CAA37469.1| 764|Homo sapiens protein ( Human mRNA for
upstream binding factor (hUBF). ).
Length = 764
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 240 PKRPLTPFFKFM*QMRPALLAKNPGIS 320
PK+PLTP+F+F + R +P +S
Sbjct: 112 PKKPLTPYFRFFMEKRAKYAKLHPEMS 138
>L08048-1|AAA64970.1| 216|Homo sapiens HMG-1 protein.
Length = 216
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKR + FF F + RP + ++PG+S
Sbjct: 93 NAPKRLPSAFFLFCSEYRPKIKGEHPGLS 121
>BC042297-1|AAH42297.1| 727|Homo sapiens upstream binding
transcription factor, RNA polymerase I protein.
Length = 727
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 240 PKRPLTPFFKFM*QMRPALLAKNPGIS 320
PK+PLTP+F+F + R +P +S
Sbjct: 112 PKKPLTPYFRFFMEKRAKYAKLHPEMS 138
>BC031423-1|AAH31423.1| 313|Homo sapiens UBTF protein protein.
Length = 313
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 240 PKRPLTPFFKFM*QMRPALLAKNPGIS 320
PK+PLTP+F+F + R +P +S
Sbjct: 112 PKKPLTPYFRFFMEKRAKYAKLHPEMS 138
>AJ308590-1|CAC34632.1| 158|Homo sapiens upstream binding
transcription factor, RNA polymerase I protein.
Length = 158
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 240 PKRPLTPFFKFM*QMRPALLAKNPGIS 320
PK+PLTP+F+F + R +P +S
Sbjct: 112 PKKPLTPYFRFFMEKRAKYAKLHPEMS 138
>Z95115-3|CAB62951.1| 211|Homo sapiens high-mobility group
(nonhistone chromosomal) protein 1-like 10 protein.
Length = 211
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
N PKR + FF F RP + ++PG+S
Sbjct: 93 NAPKRTPSAFFLFCSAYRPKIKGEHPGLS 121
>X57500-1|CAA40736.1| 628|Homo sapiens nuclear factor IV protein.
Length = 628
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +1
Query: 190 HVTIQKNLQSRGWA*TSLNDLLRHSLSSCDKCDQLFLPRTL 312
H+ I +L SR ++ + L D++ HSL CD Q FLP +L
Sbjct: 27 HIEIFTDLSSR-FSKSQL-DIIIHSLKKCDISLQFFLPFSL 65
>M30938-1|AAA36154.1| 732|Homo sapiens protein ( Human Ku (p70/p80)
subunit mRNA, complete cds. ).
Length = 732
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +1
Query: 190 HVTIQKNLQSRGWA*TSLNDLLRHSLSSCDKCDQLFLPRTL 312
H+ I +L SR ++ + L D++ HSL CD Q FLP +L
Sbjct: 131 HIEIFTDLSSR-FSKSQL-DIIIHSLKKCDISLQFFLPFSL 169
>J04977-1|AAA59475.1| 732|Homo sapiens G22P1 protein.
Length = 732
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +1
Query: 190 HVTIQKNLQSRGWA*TSLNDLLRHSLSSCDKCDQLFLPRTL 312
H+ I +L SR ++ + L D++ HSL CD Q FLP +L
Sbjct: 131 HIEIFTDLSSR-FSKSQL-DIIIHSLKKCDISLQFFLPFSL 169
>DQ787434-1|ABG46942.1| 732|Homo sapiens X-ray repair complementing
defective repair in Chinese hamster cells 5 (double-
protein.
Length = 732
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +1
Query: 190 HVTIQKNLQSRGWA*TSLNDLLRHSLSSCDKCDQLFLPRTL 312
H+ I +L SR ++ + L D++ HSL CD Q FLP +L
Sbjct: 131 HIEIFTDLSSR-FSKSQL-DIIIHSLKKCDISLQFFLPFSL 169
>BC095442-1|AAH95442.1| 732|Homo sapiens X-ray repair complementing
defective repair in Chinese hamster cells 5 (double-
protein.
Length = 732
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +1
Query: 190 HVTIQKNLQSRGWA*TSLNDLLRHSLSSCDKCDQLFLPRTL 312
H+ I +L SR ++ + L D++ HSL CD Q FLP +L
Sbjct: 131 HIEIFTDLSSR-FSKSQL-DIIIHSLKKCDISLQFFLPFSL 169
>BC019027-1|AAH19027.1| 732|Homo sapiens X-ray repair complementing
defective repair in Chinese hamster cells 5 (double-
protein.
Length = 732
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +1
Query: 190 HVTIQKNLQSRGWA*TSLNDLLRHSLSSCDKCDQLFLPRTL 312
H+ I +L SR ++ + L D++ HSL CD Q FLP +L
Sbjct: 131 HIEIFTDLSSR-FSKSQL-DIIIHSLKKCDISLQFFLPFSL 169
>AK222603-1|BAD96323.1| 732|Homo sapiens ATP-dependent DNA helicase
II variant protein.
Length = 732
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +1
Query: 190 HVTIQKNLQSRGWA*TSLNDLLRHSLSSCDKCDQLFLPRTL 312
H+ + +L SR ++ + L D++ HSL CD Q FLP +L
Sbjct: 131 HIEVFTDLSSR-FSKSQL-DIIIHSLKKCDISLQFFLPFSL 169
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,063,443
Number of Sequences: 237096
Number of extensions: 807057
Number of successful extensions: 1294
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 1271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1569468906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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