Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0237
         (320 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    28   1.3  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    28   1.3  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    28   1.3  
AC024859-13|AAK29965.2|  338|Caenorhabditis elegans Hypothetical...    28   1.3  
Z49966-4|CAA90244.1|  360|Caenorhabditis elegans Hypothetical pr...    25   9.2  
AF016420-3|AAB65310.1|  291|Caenorhabditis elegans Serpentine re...    25   9.2  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 192 CDYTKKSAEQRLGLNKPKRPLTP 260
           CD+ K++ E R  +N PK PL P
Sbjct: 665 CDFQKEAEELRKHINDPKIPLPP 687


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 192 CDYTKKSAEQRLGLNKPKRPLTP 260
           CD+ K++ E R  +N PK PL P
Sbjct: 665 CDFQKEAEELRKHINDPKIPLPP 687


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 192 CDYTKKSAEQRLGLNKPKRPLTP 260
           CD+ K++ E R  +N PK PL P
Sbjct: 248 CDFQKEAEELRKHINDPKIPLPP 270


>AC024859-13|AAK29965.2|  338|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.17 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 228 GLNKPKRPLTPFFKFM*QMRPALLAKNP 311
           G   P+RPL P+ ++  +M P + A+NP
Sbjct: 22  GPKVPERPLQPYMRYSRKMWPKVRAENP 49


>Z49966-4|CAA90244.1|  360|Caenorhabditis elegans Hypothetical
           protein F35C11.4 protein.
          Length = 360

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 81  FNYSLSLIFINKKIFSSKTK 22
           FNYSLS+  +  KIFS   K
Sbjct: 109 FNYSLSICNVESKIFSDLLK 128


>AF016420-3|AAB65310.1|  291|Caenorhabditis elegans Serpentine
           receptor, class sx protein13 protein.
          Length = 291

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -2

Query: 127 IITKAL*LSISSHTLF*LQFIINIYKQK 44
           +I+K+L L +SS TLF    II +YK+K
Sbjct: 164 LISKSLILFMSSITLFVYIIIIILYKKK 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,246,886
Number of Sequences: 27780
Number of extensions: 131873
Number of successful extensions: 323
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)