Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0237
         (320 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.17 
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   3.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          20   6.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   6.4  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    20   6.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            20   6.4  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.4 bits (53), Expect = 0.17
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 35  LNIFLFININDKL*LK*SMTTYTQLQRLSNYFLGNYKTV 151
           LN+  FIN NDK      +TT   L  +  Y  G +K +
Sbjct: 79  LNVLYFINKNDKYEENTILTTMPLLINVVKYLGGKHKFI 117


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 305 LGKKSWSHLSHE 270
           LGKK +SH  H+
Sbjct: 273 LGKKEFSHYEHQ 284


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 119 SNYFLGNYKTV 151
           S YFLGNY  V
Sbjct: 369 SIYFLGNYSLV 379


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 293 SWSHLSHELK 264
           SWSH S+E+K
Sbjct: 179 SWSHGSNEIK 188


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 88  TLF*LQFIINIYKQKD 41
           T+F L F+ N  K+KD
Sbjct: 385 TMFDLDFLTNACKKKD 400


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 175 NANTMHVTIQKNLQSRGW 228
           N N +  +I  N+ S GW
Sbjct: 361 NGNILSPSIHDNICSNGW 378



 Score = 19.8 bits (39), Expect = 8.4
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 116 GAVIEYK*SYFI 81
           GAVIE+K SY I
Sbjct: 262 GAVIEFKYSYEI 273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,802
Number of Sequences: 438
Number of extensions: 1933
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)