Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0237
(320 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 32 0.074
At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro... 32 0.098
At5g23420.1 68418.m02747 high mobility group (HMG1/2) family pro... 31 0.13
At1g20693.1 68414.m02592 high mobility group protein beta1 (HMGb... 31 0.23
At3g51880.2 68416.m05690 high mobility group protein alpha (HMGa... 29 0.69
At3g51880.1 68416.m05689 high mobility group protein alpha (HMGa... 29 0.69
At1g20696.1 68414.m02593 high mobility group protein beta2 (HMGb... 28 1.2
At4g35570.1 68417.m05054 high mobility group protein delta (HMGd... 28 1.6
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro... 26 4.9
At2g17560.1 68415.m02032 high mobility group protein gamma (HMGg... 25 8.6
At1g02720.2 68414.m00224 glycosyl transferase family 8 protein l... 25 8.6
At1g02720.1 68414.m00223 glycosyl transferase family 8 protein l... 25 8.6
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 32.3 bits (70), Expect = 0.074
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 207 KSAEQRLGLNKPKRPLTPFFKFM*QMRPALLAKNPGIS 320
K + + NKPK+P + +F F R ++L ++PGI+
Sbjct: 361 KKKNENVDPNKPKKPTSSYFLFCKDARKSVLEEHPGIN 398
>At4g23800.1 68417.m03422 high mobility group (HMG1/2) family
protein similar to HMG2B [Homo sapiens] GI:32335;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 456
Score = 31.9 bits (69), Expect = 0.098
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 201 TKKSAEQRLGLNKPKRPLTPFFKFM*QMRPALLAKNPG 314
TKK + + NKPK+P + +F F R L + PG
Sbjct: 366 TKKKKNENVDPNKPKKPASSYFLFSKDERKKLTEERPG 403
>At5g23420.1 68418.m02747 high mobility group (HMG1/2) family
protein similar to high mobility group protein 2 HMG2
[Ipomoea nil] GI:1052956; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 241
Score = 31.5 bits (68), Expect = 0.13
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNPG 314
NKPKRPLT FF FM R +++ G
Sbjct: 113 NKPKRPLTAFFIFMSDFRKTFKSEHNG 139
>At1g20693.1 68414.m02592 high mobility group protein beta1
(HMGbeta1) / HMG protein beta1 nearly identical to HMG
protein (HMGbeta1) [Arabidopsis thaliana] GI:2832359
Length = 144
Score = 30.7 bits (66), Expect = 0.23
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNP 311
NKPKRP + FF FM R +NP
Sbjct: 36 NKPKRPASAFFVFMEDFRETFKKENP 61
>At3g51880.2 68416.m05690 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 185
Score = 29.1 bits (62), Expect = 0.69
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 201 TKKSAEQRLGLNKPKRPLTPFFKFM*QMRPALLAKNPGI 317
T+K + + NKPKR + FF F+ R +NP +
Sbjct: 40 TRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNV 78
>At3g51880.1 68416.m05689 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 178
Score = 29.1 bits (62), Expect = 0.69
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 201 TKKSAEQRLGLNKPKRPLTPFFKFM*QMRPALLAKNPGI 317
T+K + + NKPKR + FF F+ R +NP +
Sbjct: 40 TRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNV 78
>At1g20696.1 68414.m02593 high mobility group protein beta2
(HMGbeta2) / HMG protein beta2 nearly identical to HMG
protein (HMGbeta2) [Arabidopsis thaliana] GI:2832361
Length = 141
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 201 TKKSAEQRLGL----NKPKRPLTPFFKFM*QMRPALLAKNP 311
TKK A+ G NKPKRP + FF FM R ++P
Sbjct: 18 TKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHP 58
>At4g35570.1 68417.m05054 high mobility group protein delta
(HMGdelta) / HMG protein delta identical to HMG protein
(HMGdelta) [Arabidopsis thaliana] GI:2832363
Length = 125
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNP 311
N+PK+P +PFF F+ R NP
Sbjct: 32 NRPKKPPSPFFVFLDDFRKEFNLANP 57
>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
protein similar to HMG protein [Arabidopsis thaliana]
GI:2832361; contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 151
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 207 KSAEQRLGLNKPKRPLTPFFKFM*QMRPALLAKNPGI 317
K +L PK+P T FF F+ R +NP +
Sbjct: 52 KKKPVKLQTKMPKKPATAFFFFLDDFRKQYQEENPDV 88
>At2g17560.1 68415.m02032 high mobility group protein gamma
(HMGgamma) / HMG protein gamma nearly identical to HMG
protein (HMGgamma) [Arabidopsis thaliana] GI:2832355
Length = 138
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 234 NKPKRPLTPFFKFM*QMRPALLAKNP 311
N+PKRP + FF F+ R NP
Sbjct: 33 NQPKRPPSAFFVFLEDFRKEFNLANP 58
>At1g02720.2 68414.m00224 glycosyl transferase family 8 protein low
similarity to putative glycosyl transferase from
Neisseria gonorrhoeae [GI:595812]; contains Pfam
glycosyl transferase family 8 domain PF01501
Length = 361
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 130 FRELQDC--SMRKSKLDNANTMHVTIQKNLQSRGWA*TSLNDLLRHSL 267
FR + C S S + N N +HV I ++ + ++N +L+HS+
Sbjct: 60 FRNAEQCRSSGEDSGVCNPNLVHVAITLDIDYLRGSIAAVNSILQHSM 107
>At1g02720.1 68414.m00223 glycosyl transferase family 8 protein low
similarity to putative glycosyl transferase from
Neisseria gonorrhoeae [GI:595812]; contains Pfam
glycosyl transferase family 8 domain PF01501
Length = 361
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 130 FRELQDC--SMRKSKLDNANTMHVTIQKNLQSRGWA*TSLNDLLRHSL 267
FR + C S S + N N +HV I ++ + ++N +L+HS+
Sbjct: 60 FRNAEQCRSSGEDSGVCNPNLVHVAITLDIDYLRGSIAAVNSILQHSM 107
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,669,131
Number of Sequences: 28952
Number of extensions: 115052
Number of successful extensions: 271
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 350523880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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