Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0236
(565 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch... 184 6e-48
SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo... 42 5e-05
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 30 0.27
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 29 0.47
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa... 29 0.62
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 28 0.82
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 28 0.82
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 28 1.1
SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy... 27 1.4
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 27 1.9
SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr... 27 1.9
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 27 2.5
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 22 3.2
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 26 3.3
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 26 3.3
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 26 4.4
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 4.4
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 25 5.8
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 25 5.8
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 5.8
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 5.8
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po... 25 7.7
>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 437
Score = 184 bits (449), Expect = 6e-48
Identities = 83/190 (43%), Positives = 133/190 (70%), Gaps = 2/190 (1%)
Frame = +1
Query: 1 FKLSNFTEMMARYKQLLTYIK-SAVTRNHSEKSINSILDYISTSRNMELLQDFYETTLEA 177
F+L + +M+ Y++LL Y ++T+N+SEKSI +I++Y S+ N E L+ FY+ T +A
Sbjct: 80 FQLKKYDDMLQSYQRLLGYTNWLSITKNYSEKSIYNIVEYASSCENTEFLEKFYDVTTKA 139
Query: 178 LKDAKNDRLWFKTNTKLGKLYYDRGDFNKLAKILKQLHQSCQTDEGE-DDLKKGTQLLEI 354
L++ N+RL K + + + +++K +L+Q+H+ + D +GT LLE+
Sbjct: 140 LQNLNNERLMLKVLMHVARFLLTQKNYHKFKYLLRQMHELLSDENNSVADQNRGTHLLEL 199
Query: 355 YALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTD 534
Y+LEIQMY+ ++NK+LK LY+ SL +K+AIPHP IMG+IRECGGKMH++E ++ +A T+
Sbjct: 200 YSLEIQMYSDIEDNKRLKELYQSSLRVKTAIPHPRIMGIIRECGGKMHMQENQWSEAQTN 259
Query: 535 FFEAFKNYDE 564
FFE+FK+YDE
Sbjct: 260 FFESFKSYDE 269
>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 42.3 bits (95), Expect = 5e-05
Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 4/162 (2%)
Frame = +1
Query: 85 SEKSINSILDYISTSRNMELLQDFYETTLEALKDAKNDRLWF---KTNTKLGKLYYDRGD 255
S K + +++D S + LQ E + +K A ++ F TKL LYYD
Sbjct: 83 SAKIVRTLIDKFSGEKKSLPLQ--IEVANDCIKWAIKEKRTFLRQALETKLISLYYDNSS 140
Query: 256 FNKLAKILKQLHQSCQTDEGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKA-LYEQSLH 432
+ ++ L + DD L E++ LE ++Y A +N K +A L
Sbjct: 141 YTDAINLINTLLSELKR---MDD---KMLLTEVHLLESKVYHAIRNIPKARASLTAAKTS 194
Query: 433 IKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 558
+ P++ G + G +H + +F+ A++ F+EA++ +
Sbjct: 195 ANAVYCPPMLQGNLDLQSGILHADDMDFKTAYSYFYEAYEGF 236
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 29.9 bits (64), Expect = 0.27
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = +1
Query: 121 STSRNMELLQDFYETTLEA--LKDAKNDRLWFKTNTKLGKLYYDRGDFNKLAKI-LKQLH 291
S SR+ + L+ Y+ +EA + D + RLW+ + L + +FN I L +
Sbjct: 174 SFSRS-DTLRSLYKQVMEAFQISDGTSFRLWYLNKSNLSSRFVSLSEFNDQPAIALLSEY 232
Query: 292 QSCQTDEGEDDLKKGTQLLE 351
C T E D+ G+ LLE
Sbjct: 233 AVCMT-IFEIDIADGSLLLE 251
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 29.1 bits (62), Expect = 0.47
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +1
Query: 172 EALKDAKNDRLWFKTNT----KLGKLYYDRGDFNKLAKILKQLHQSCQTDEGEDDLK 330
EA+K K L +TN+ +LG LY + D N A + KQ ++ +T+ + +K
Sbjct: 458 EAIKSYKRALLGSQTNSSILVRLGNLYEELQDLNSAASMYKQCIKTEETEISPETIK 514
>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 503
Score = 28.7 bits (61), Expect = 0.62
Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 8/108 (7%)
Frame = +1
Query: 49 LTYIKSAVTRNHSEKSINSILDYISTS-RNMELLQDFYETTLEALKDA--KNDRLWFKTN 219
LTY+ S V + E+ N + TS N E ALK A K + N
Sbjct: 326 LTYLASIVQQGMKERKQNESVKQGETSFGNSEFKNPLERVAYYALKSAAQKAKLIAAFEN 385
Query: 220 TKLGKLYYD--RGDFNKLA---KILKQLHQSCQTDEGEDDLKKGTQLL 348
+L +L + + KL K+L+QL + C + E DL +G LL
Sbjct: 386 RQLRRLVFSLIQAQLEKLQLKMKVLEQLEKMCSLELSELDL-RGKNLL 432
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 28.3 bits (60), Expect = 0.82
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +1
Query: 250 GDFNKLAKILKQLHQSCQTDEGEDDLKKGTQLLE---IYALEIQMYTAQKNNKKLKALYE 420
GD K L++L +T +D+K LLE + +++ + A + K+KA +
Sbjct: 35 GDLKTQIKKLQRLRDQIKTWASSNDIKDKKALLENRRLIEAKMEEFKAVEREMKIKAFSK 94
Query: 421 QSLHIKSAI 447
+ L I S +
Sbjct: 95 EGLSIASKL 103
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 28.3 bits (60), Expect = 0.82
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 307 DEGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHI 435
DE EDDL++ LE+ + + + KN + + SLH+
Sbjct: 365 DENEDDLQRYFTALEMQQDQKEQHKKSKNKDPFRKITHPSLHL 407
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 27.9 bits (59), Expect = 1.1
Identities = 21/84 (25%), Positives = 38/84 (45%)
Frame = +1
Query: 85 SEKSINSILDYISTSRNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYYDRGDFNK 264
+E S NSI+ + R L+D+ T KD+ + N+KL + R + K
Sbjct: 384 AETSNNSIMIMCADERTCLQLRDYLSTVTYDNKDSLKNM-----NSKLVDYFQWREQYRK 438
Query: 265 LAKILKQLHQSCQTDEGEDDLKKG 336
++K +K+ S + + +KG
Sbjct: 439 MSKSIKKPEPSKEREASNTTSRKG 462
>SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 256
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 542 SKKSVCAFSNSPSRRCILPPHSLMTPMMSGCG 447
++ S+C + +SPS+R + +L T SGCG
Sbjct: 119 TQDSICYYVSSPSKRAVFTGDTLFT---SGCG 147
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 27.1 bits (57), Expect = 1.9
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Frame = +1
Query: 286 LHQSCQTDEGEDDLKKGTQLLEIY-ALEIQMYTAQKNNKKLKALYE----QSLHIKSAIP 450
L S E D + QL E + A+ I+ Y + KK K+LY+ + + +K +I
Sbjct: 717 LRDSWMFHENGSDTYRSAQLQETFLAILIRFYHIRLYGKKCKSLYQFCILEEMRLKKSIE 776
Query: 451 HPLIMGVIRECGGKMHLREGEFEKAHTDFFE 543
++ L FE++ T FFE
Sbjct: 777 ELAASNMMEYI--PESLWSYSFERSDTGFFE 805
>SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 27.1 bits (57), Expect = 1.9
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = +1
Query: 196 DRLWFKTNTKLGKLYYDRGDFNKLAKILKQLHQSCQTDEGEDDLKKGTQLLEIYALEIQM 375
DR W K +L + D K I+K HQ +T + + L IY+ E Q+
Sbjct: 69 DRTWNLKEFKGIELDIAKSDSYKYTFIIKDCHQDWETSDEKSSLSYEYDFTPIYSKEDQV 128
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 26.6 bits (56), Expect = 2.5
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +1
Query: 94 SINSILDYISTSRNMELLQDFYETTLEALKDAKNDRL---WFKTNTKLGKLYYDRGDFNK 264
S ++I+ ++ + + + TL + A +DRL W T +K ++ RG FN
Sbjct: 199 STDAIVKFVLEGHDRGVNWCAFHPTLPLILSAGDDRLVKLWRMTASKAWEVDTCRGHFNN 258
Query: 265 LAKILKQLHQSCQTDEGED 321
++ L HQ ED
Sbjct: 259 VSCCLFHPHQELILSASED 277
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 22.2 bits (45), Expect(2) = 3.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 157 YETTLEALKDAKNDRLWF 210
Y L LKD K+ +LW+
Sbjct: 425 YRQALYHLKDPKDPKLWY 442
Score = 22.2 bits (45), Expect(2) = 3.2
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +1
Query: 262 KLAKILKQLHQSCQTDEGE----DDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSL 429
+L I KQ H+ Q+ E D+ K +L+IY +Y +K K K YE+ L
Sbjct: 480 RLGIIYKQQHKFAQSLELFRHILDNPPKPLTVLDIYFQIGHVYEQRKEYKLAKEAYERVL 539
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 26.2 bits (55), Expect = 3.3
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 6/130 (4%)
Frame = +1
Query: 70 VTRNHSEKSINSILDYISTSRNMELLQDFYE-TTLEALKDAKNDRLWFKTNTKLGKLYYD 246
+TR + E+ +NS+ D + N E++ + T + + F T L D
Sbjct: 53 LTRQNLEEKVNSLQDSVE---NFEIIHESLRFTVFYQILSQFMQNICFHDFTIQDLLKPD 109
Query: 247 RGDFNKLAKILKQLHQSCQTDEG-----EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKA 411
R N+L IL + + E +DD++K LLE Y L AQ+ + + K
Sbjct: 110 R---NRLQLILSAVINFAKLREERLQQFDDDIQKRESLLETYTL----LDAQRKDLEEKV 162
Query: 412 LYEQSLHIKS 441
L Q ++S
Sbjct: 163 LLSQDRKLES 172
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 26.2 bits (55), Expect = 3.3
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 64 SAVTRNHSEKSINSILDYISTSRNMELLQDFYETTLEALKDAKNDRLWFK 213
S+V + H E +N LDY TS + YE + E + +D+ FK
Sbjct: 324 SSVWQTHMEGLMNKALDYYFTSDKI-----IYEPSCEPTESCNSDQTAFK 368
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.8 bits (54), Expect = 4.4
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Frame = +1
Query: 37 YKQLLTY---IKSAVTRNHSEKSINSILDYISTSRNMELLQDFYETTLEALKDAKN-DRL 204
+ Q L Y + S T + S SI+D + S + L++ + E ++ A L
Sbjct: 1767 HPQALVYSLTVSSKSTNPQQKHSAKSIMDSM-LSHSDTLVRQALLVSQELIRVAILWHEL 1825
Query: 205 WFKTNTKLGKLYYDRGDFNKLAKILKQLHQSCQ 303
W++ + + Y+ D + + I+K LH++ +
Sbjct: 1826 WYEGLEEASQAYFSDHDISLMIDIVKPLHETLE 1858
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.8 bits (54), Expect = 4.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -2
Query: 507 LTKVHFAAAFSDDTHDEWMWY 445
+T+ H FS+ TH +W+ Y
Sbjct: 677 VTQTHSEGTFSNSTHGDWLIY 697
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1095
Score = 25.4 bits (53), Expect = 5.8
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = +1
Query: 88 EKSINSILDYISTSRNMELLQDFYETTLEALK 183
E + +LD+I ++E+L D++E ++L+
Sbjct: 753 EPILRKLLDHIQNEPSVEMLADYFECFYQSLE 784
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 211 KTNTKLGKLYYDRGDFNKLAKILKQLHQSC 300
+T +L KLY+ RG +++ A L++ Q C
Sbjct: 760 ETYVRLAKLYHARGFYSRAADSLEKSIQIC 789
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.4 bits (53), Expect = 5.8
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 316 EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSL 429
ED K+G ++YA I Y+ NKK K Y L
Sbjct: 1074 EDPPKEGETTPQLYAALIDGYSELDENKKRKPKYRIKL 1111
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 355 YALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIM 465
Y LE++ T++KN ++ AL + +P P+I+
Sbjct: 604 YVLEVKNGTSEKNPTRIVALENGNTKWMDYLPRPVIL 640
>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 460
Score = 25.0 bits (52), Expect = 7.7
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +1
Query: 358 ALEIQMYTAQ-KNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTD 534
A++I +++ KN L Y + +H K+ P + + ECG + E F + +
Sbjct: 325 AVQIILHSVNLKNVCDLFLRYTRDIHYKNTPKDPNFLKISIECGKIEQVSESLFPRRFRE 384
Query: 535 FFE 543
+E
Sbjct: 385 MYE 387
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.133 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,118,625
Number of Sequences: 5004
Number of extensions: 39451
Number of successful extensions: 143
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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