Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0236
(565 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1222 + 9877607-9877691,9879235-9879390,9880070-9880148,988... 278 3e-75
05_04_0400 + 20977173-20977481,20978258-20978577,20978724-209788... 30 1.5
02_05_0039 + 25335690-25335883,25335984-25336131,25337292-253373... 29 1.9
08_02_0297 + 15469370-15469834,15470644-15470696,15471058-154711... 29 3.4
11_04_0087 + 13368700-13369051,13369491-13369580,13370685-133709... 28 4.5
07_03_0868 - 22157711-22157937,22158112-22158758,22158918-22159570 28 4.5
03_06_0335 + 33211705-33211800,33211886-33211982,33212078-332122... 28 4.5
01_06_1257 - 35778078-35778299,35778952-35779069,35779294-357794... 28 4.5
>01_01_1222 +
9877607-9877691,9879235-9879390,9880070-9880148,
9881471-9881711,9881794-9881868,9881960-9882094,
9882634-9882821,9882915-9882983,9883060-9883150,
9883262-9883396,9883675-9883740,9883823-9883935,
9884020-9884110
Length = 507
Score = 278 bits (681), Expect = 3e-75
Identities = 124/190 (65%), Positives = 161/190 (84%), Gaps = 2/190 (1%)
Frame = +1
Query: 1 FKLSNFTEMMARYKQLLTYIKSAVTRNHSEKSINSILDYIS--TSRNMELLQDFYETTLE 174
+KL + EMM Y+++LTYIKSAVTRN+SEK IN+I+D++S S+N LLQ+FY+TTL+
Sbjct: 120 YKLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLQEFYQTTLK 179
Query: 175 ALKDAKNDRLWFKTNTKLGKLYYDRGDFNKLAKILKQLHQSCQTDEGEDDLKKGTQLLEI 354
AL++AKN+RLWFKTN KL K+++D G++ +++KILK+LH+SCQ ++G DD KKGTQLLE+
Sbjct: 180 ALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGSDDQKKGTQLLEV 239
Query: 355 YALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTD 534
YA+EIQMYT KNNKKLK LY ++L IKSAIPHP IMG+IRECGGKMH+ E ++ A TD
Sbjct: 240 YAIEIQMYTETKNNKKLKELYTKALSIKSAIPHPRIMGIIRECGGKMHMAERQWADAATD 299
Query: 535 FFEAFKNYDE 564
FFEAFKNYDE
Sbjct: 300 FFEAFKNYDE 309
>05_04_0400 +
20977173-20977481,20978258-20978577,20978724-20978850,
20979827-20979914,20980328-20980425,20980607-20980676,
20980787-20980887,20981207-20981323,20981417-20981493,
20981716-20982229
Length = 606
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Frame = +1
Query: 73 TRNHSEKSINSILDYISTSRNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGK--LYYD 246
T S S+N+ +IS ++ ++ +E +K + R KTN K K + Y
Sbjct: 128 TLGSSMSSLNTSSGFISAAKGDKISILAFEVANTIVKGSNLMRALSKTNIKHLKEVVLYS 187
Query: 247 RGDFNKLAKILKQLHQSCQTDEGED 321
G + ++K + +LH+ TD+ E+
Sbjct: 188 EGVQHLISKDMDELHKIAATDKREE 212
>02_05_0039 +
25335690-25335883,25335984-25336131,25337292-25337349,
25337652-25338116,25338435-25338575,25338694-25339934
Length = 748
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 208 FKTNTKLGKLYYDRGDFNKLAK-ILKQLHQSCQTDEGEDDLKKGTQLLEI 354
F+ N + GKL+ DRGD + L + I T+E + GT+++ +
Sbjct: 168 FRLNCRAGKLFLDRGDVDYLVRNISVDNGYMSVTNEQNNSTSNGTEIMVV 217
>08_02_0297 +
15469370-15469834,15470644-15470696,15471058-15471149,
15471515-15471598,15471782-15471876,15474036-15474345,
15474465-15474549,15474802-15474955,15475200-15475541
Length = 559
Score = 28.7 bits (61), Expect = 3.4
Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Frame = +1
Query: 163 TTLEALKDAKNDRLWFKTNTKLGK-----LYYDRGDFNKLAKILKQLHQSCQTDEGEDDL 327
+T + LK A N+ F + +K+ +Y D Q+ ++ D
Sbjct: 235 STYDLLKAATNN---FSSKSKIASGGWATVYKDIQTLTICKSFAAQIDNQSHLEKISFDF 291
Query: 328 KKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHL 501
Q+ + I++Y K++ + YE+ L++ + + H I+ ++ C G+ L
Sbjct: 292 TFQAQMRNSLEIAIKVYPMGTGEKRVFSQYERELNLLTKLQHTNIIKLLGHCTGEWEL 349
>11_04_0087 +
13368700-13369051,13369491-13369580,13370685-13370988,
13371374-13371656
Length = 342
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +1
Query: 340 QLLEIYALEIQMY--TAQKNNKKLKALYEQSLHIKSAIPHPL 459
+LL IY + + + T K++KKLKAL E+S + S P PL
Sbjct: 243 KLLSIYRVWVSLRRKTKAKSSKKLKALAEESGILFSLNPLPL 284
>07_03_0868 - 22157711-22157937,22158112-22158758,22158918-22159570
Length = 508
Score = 28.3 bits (60), Expect = 4.5
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Frame = +1
Query: 238 YYDRGDFNKLAKILKQLHQSCQTDEGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALY 417
YYD ++ + + H C GED+L K +L + E+ + + + L+
Sbjct: 355 YYDAEEYGWASDEDGECHSECNNKYGEDELYKVDKLYNMQCQELFYFFGFHPYRDVVFLH 414
Query: 418 EQSLHIKSAIPHPLIMGVIRE--CGGKMHLREGEFEKAH 528
S A+ + L +R+ G + H+ G F K H
Sbjct: 415 VSS---SRAVAYHLNSSKVRDLGVGWEQHISAG-FSKRH 449
>03_06_0335 +
33211705-33211800,33211886-33211982,33212078-33212204,
33212953-33213138,33213702-33213789,33214028-33214084,
33214171-33214260,33214339-33214461,33215024-33215098,
33215169-33215228,33215464-33215580,33215854-33216093,
33216181-33216246,33216370-33216459,33216914-33217003,
33217309-33217398,33217702-33217770,33217841-33217921,
33218108-33218215,33218336-33218439,33218822-33218935,
33219018-33219231
Length = 793
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +1
Query: 28 MARYKQLLTYIKSAVTRNHSEKSINSILDY---ISTSRNMELLQDFYETTLEALKDAKND 198
++ Y +++ Y+ ++ T+ + I SI+ ISTS +E L D + ++ + A+ND
Sbjct: 414 LSNYPRVMDYLDNSTTKVMALVIIQSIMKNTTCISTSDKIEALFDLIKGLIKDMDGAQND 473
Query: 199 RL 204
L
Sbjct: 474 EL 475
>01_06_1257 -
35778078-35778299,35778952-35779069,35779294-35779433,
35779763-35779864,35779971-35780051,35780333-35780402,
35781053-35781114,35781789-35782183,35782303-35782386,
35782949-35783041,35783144-35783195,35783310-35783376,
35783492-35783550,35784209-35784256,35784927-35785040,
35785162-35785335,35785417-35785944,35786025-35786094,
35786668-35786711
Length = 840
Score = 28.3 bits (60), Expect = 4.5
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Frame = +1
Query: 73 TRNHSEKSINSILDY--ISTSRNMELLQDFYETTLEALKD-AKNDRLWFKTNTKLGKLYY 243
T + S+ + + + Y + +R EL + + +++ AK R+W TN KLY
Sbjct: 468 TFDSSQLVLTACMGYQAVDEARLQELRNKHRPSVISSMEQRAKGLRVWRDTNGLASKLYN 527
Query: 244 DRGDFNKLAKI-LKQLHQSCQTDEGE-DDLKKG 336
+ D L + +QL +T G DD+ G
Sbjct: 528 FKRDPEPLVSLSTEQLSDLTETSSGSTDDMYSG 560
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.133 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,879,779
Number of Sequences: 37544
Number of extensions: 230938
Number of successful extensions: 637
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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