Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0236
         (565 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U57758-1|AAB49932.1|  360|Drosophila melanogaster putative thyro...   369   e-102
AY069836-1|AAL39981.1|  444|Drosophila melanogaster SD08021p pro...   369   e-102
AF129079-1|AAD28604.1|  444|Drosophila melanogaster COP9 signalo...   369   e-102
AE014134-1594|AAF52736.1|  444|Drosophila melanogaster CG9556-PB...   369   e-102
AE014134-1593|AAN10685.1|  444|Drosophila melanogaster CG9556-PA...   369   e-102
L23195-1|AAA60323.1| 4639|Drosophila melanogaster cytoplasmic dy...    33   0.27 
AE014296-904|AAN11615.1| 3388|Drosophila melanogaster CG7507-PB,...    33   0.27 
AE014296-903|AAF47942.3| 4639|Drosophila melanogaster CG7507-PA,...    33   0.27 
BT015990-1|AAV36875.1| 1449|Drosophila melanogaster RE54461p pro...    30   2.5  
AY051455-1|AAK92879.1| 1126|Drosophila melanogaster GH12050p pro...    30   2.5  
AE014134-732|AAN10345.1| 1126|Drosophila melanogaster CG3054-PB,...    30   2.5  
AE014134-731|AAF51018.3| 1449|Drosophila melanogaster CG3054-PA,...    30   2.5  
AE014297-922|AAF54368.1|  392|Drosophila melanogaster CG16755-PA...    28   7.6  

>U57758-1|AAB49932.1|  360|Drosophila melanogaster putative thyroid
           receptor interactingprotein protein.
          Length = 360

 Score =  369 bits (908), Expect = e-102
 Identities = 172/188 (91%), Positives = 180/188 (95%)
 Frame = +1

Query: 1   FKLSNFTEMMARYKQLLTYIKSAVTRNHSEKSINSILDYISTSRNMELLQDFYETTLEAL 180
           F+L N+ EMM RYKQLLTYIKSAVTRNHSEKSINSILDYISTS+NM LLQ+FYETTL+AL
Sbjct: 81  FRLCNYDEMMVRYKQLLTYIKSAVTRNHSEKSINSILDYISTSKNMALLQNFYETTLDAL 140

Query: 181 KDAKNDRLWFKTNTKLGKLYYDRGDFNKLAKILKQLHQSCQTDEGEDDLKKGTQLLEIYA 360
           +DAKNDRLWFKTNTKLGKLY+DR DF KL KILKQLHQSCQTD+GEDDLKKGTQLLEIYA
Sbjct: 141 RDAKNDRLWFKTNTKLGKLYFDRSDFTKLQKILKQLHQSCQTDDGEDDLKKGTQLLEIYA 200

Query: 361 LEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFF 540
           LEIQMYT QKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFF
Sbjct: 201 LEIQMYTVQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFF 260

Query: 541 EAFKNYDE 564
           EAFKNYDE
Sbjct: 261 EAFKNYDE 268


>AY069836-1|AAL39981.1|  444|Drosophila melanogaster SD08021p
           protein.
          Length = 444

 Score =  369 bits (908), Expect = e-102
 Identities = 172/188 (91%), Positives = 180/188 (95%)
 Frame = +1

Query: 1   FKLSNFTEMMARYKQLLTYIKSAVTRNHSEKSINSILDYISTSRNMELLQDFYETTLEAL 180
           F+L N+ EMM RYKQLLTYIKSAVTRNHSEKSINSILDYISTS+NM LLQ+FYETTL+AL
Sbjct: 81  FRLCNYDEMMVRYKQLLTYIKSAVTRNHSEKSINSILDYISTSKNMALLQNFYETTLDAL 140

Query: 181 KDAKNDRLWFKTNTKLGKLYYDRGDFNKLAKILKQLHQSCQTDEGEDDLKKGTQLLEIYA 360
           +DAKNDRLWFKTNTKLGKLY+DR DF KL KILKQLHQSCQTD+GEDDLKKGTQLLEIYA
Sbjct: 141 RDAKNDRLWFKTNTKLGKLYFDRSDFTKLQKILKQLHQSCQTDDGEDDLKKGTQLLEIYA 200

Query: 361 LEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFF 540
           LEIQMYT QKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFF
Sbjct: 201 LEIQMYTVQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFF 260

Query: 541 EAFKNYDE 564
           EAFKNYDE
Sbjct: 261 EAFKNYDE 268


>AF129079-1|AAD28604.1|  444|Drosophila melanogaster COP9
           signalosome subunit 2 CSN2 protein.
          Length = 444

 Score =  369 bits (908), Expect = e-102
 Identities = 172/188 (91%), Positives = 180/188 (95%)
 Frame = +1

Query: 1   FKLSNFTEMMARYKQLLTYIKSAVTRNHSEKSINSILDYISTSRNMELLQDFYETTLEAL 180
           F+L N+ EMM RYKQLLTYIKSAVTRNHSEKSINSILDYISTS+NM LLQ+FYETTL+AL
Sbjct: 81  FRLCNYDEMMVRYKQLLTYIKSAVTRNHSEKSINSILDYISTSKNMALLQNFYETTLDAL 140

Query: 181 KDAKNDRLWFKTNTKLGKLYYDRGDFNKLAKILKQLHQSCQTDEGEDDLKKGTQLLEIYA 360
           +DAKNDRLWFKTNTKLGKLY+DR DF KL KILKQLHQSCQTD+GEDDLKKGTQLLEIYA
Sbjct: 141 RDAKNDRLWFKTNTKLGKLYFDRSDFTKLQKILKQLHQSCQTDDGEDDLKKGTQLLEIYA 200

Query: 361 LEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFF 540
           LEIQMYT QKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFF
Sbjct: 201 LEIQMYTVQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFF 260

Query: 541 EAFKNYDE 564
           EAFKNYDE
Sbjct: 261 EAFKNYDE 268


>AE014134-1594|AAF52736.1|  444|Drosophila melanogaster CG9556-PB,
           isoform B protein.
          Length = 444

 Score =  369 bits (908), Expect = e-102
 Identities = 172/188 (91%), Positives = 180/188 (95%)
 Frame = +1

Query: 1   FKLSNFTEMMARYKQLLTYIKSAVTRNHSEKSINSILDYISTSRNMELLQDFYETTLEAL 180
           F+L N+ EMM RYKQLLTYIKSAVTRNHSEKSINSILDYISTS+NM LLQ+FYETTL+AL
Sbjct: 81  FRLCNYDEMMVRYKQLLTYIKSAVTRNHSEKSINSILDYISTSKNMALLQNFYETTLDAL 140

Query: 181 KDAKNDRLWFKTNTKLGKLYYDRGDFNKLAKILKQLHQSCQTDEGEDDLKKGTQLLEIYA 360
           +DAKNDRLWFKTNTKLGKLY+DR DF KL KILKQLHQSCQTD+GEDDLKKGTQLLEIYA
Sbjct: 141 RDAKNDRLWFKTNTKLGKLYFDRSDFTKLQKILKQLHQSCQTDDGEDDLKKGTQLLEIYA 200

Query: 361 LEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFF 540
           LEIQMYT QKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFF
Sbjct: 201 LEIQMYTVQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFF 260

Query: 541 EAFKNYDE 564
           EAFKNYDE
Sbjct: 261 EAFKNYDE 268


>AE014134-1593|AAN10685.1|  444|Drosophila melanogaster CG9556-PA,
           isoform A protein.
          Length = 444

 Score =  369 bits (908), Expect = e-102
 Identities = 172/188 (91%), Positives = 180/188 (95%)
 Frame = +1

Query: 1   FKLSNFTEMMARYKQLLTYIKSAVTRNHSEKSINSILDYISTSRNMELLQDFYETTLEAL 180
           F+L N+ EMM RYKQLLTYIKSAVTRNHSEKSINSILDYISTS+NM LLQ+FYETTL+AL
Sbjct: 81  FRLCNYDEMMVRYKQLLTYIKSAVTRNHSEKSINSILDYISTSKNMALLQNFYETTLDAL 140

Query: 181 KDAKNDRLWFKTNTKLGKLYYDRGDFNKLAKILKQLHQSCQTDEGEDDLKKGTQLLEIYA 360
           +DAKNDRLWFKTNTKLGKLY+DR DF KL KILKQLHQSCQTD+GEDDLKKGTQLLEIYA
Sbjct: 141 RDAKNDRLWFKTNTKLGKLYFDRSDFTKLQKILKQLHQSCQTDDGEDDLKKGTQLLEIYA 200

Query: 361 LEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFF 540
           LEIQMYT QKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFF
Sbjct: 201 LEIQMYTVQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFF 260

Query: 541 EAFKNYDE 564
           EAFKNYDE
Sbjct: 261 EAFKNYDE 268


>L23195-1|AAA60323.1| 4639|Drosophila melanogaster cytoplasmic
           dynein heavy chian protein.
          Length = 4639

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 4/137 (2%)
 Frame = +1

Query: 166 TLEALKDAK--NDRLWFKTNTKLGKLYYDRGDFNKLAKILKQLHQSCQTDEGEDDLKKGT 339
           TL+ LK  K  +  + F T+T L +      D+N L K           D   +DL   T
Sbjct: 300 TLDILKHGKRFHATVSFDTDTGLKQALATVADYNPLMK-----------DFPINDLLSAT 348

Query: 340 QLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGK--MHLREGE 513
           +L +I     Q++   +  +  K   ++ L +  AI   L   +++  G +  MH+   E
Sbjct: 349 ELEKIRPAVQQIFAHLRKVRNTKYPIQRCLKLIEAISRDLSQQLLKVLGTRRLMHIPFDE 408

Query: 514 FEKAHTDFFEAFKNYDE 564
           FE+     FE F  +D+
Sbjct: 409 FERVMNQCFEIFSCWDD 425


>AE014296-904|AAN11615.1| 3388|Drosophila melanogaster CG7507-PB,
           isoform B protein.
          Length = 3388

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 4/137 (2%)
 Frame = +1

Query: 166 TLEALKDAK--NDRLWFKTNTKLGKLYYDRGDFNKLAKILKQLHQSCQTDEGEDDLKKGT 339
           TL+ LK  K  +  + F T+T L +      D+N L K           D   +DL   T
Sbjct: 300 TLDILKHGKRFHATVSFDTDTGLKQALATVADYNPLMK-----------DFPINDLLSAT 348

Query: 340 QLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGK--MHLREGE 513
           +L +I     Q++   +  +  K   ++ L +  AI   L   +++  G +  MH+   E
Sbjct: 349 ELEKIRPAVQQIFAHLRKVRNTKYPIQRCLKLIEAISRDLSQQLLKVLGTRRLMHIPFDE 408

Query: 514 FEKAHTDFFEAFKNYDE 564
           FE+     FE F  +D+
Sbjct: 409 FERVMNQCFEIFSCWDD 425


>AE014296-903|AAF47942.3| 4639|Drosophila melanogaster CG7507-PA,
           isoform A protein.
          Length = 4639

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 4/137 (2%)
 Frame = +1

Query: 166 TLEALKDAK--NDRLWFKTNTKLGKLYYDRGDFNKLAKILKQLHQSCQTDEGEDDLKKGT 339
           TL+ LK  K  +  + F T+T L +      D+N L K           D   +DL   T
Sbjct: 300 TLDILKHGKRFHATVSFDTDTGLKQALATVADYNPLMK-----------DFPINDLLSAT 348

Query: 340 QLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGK--MHLREGE 513
           +L +I     Q++   +  +  K   ++ L +  AI   L   +++  G +  MH+   E
Sbjct: 349 ELEKIRPAVQQIFAHLRKVRNTKYPIQRCLKLIEAISRDLSQQLLKVLGTRRLMHIPFDE 408

Query: 514 FEKAHTDFFEAFKNYDE 564
           FE+     FE F  +D+
Sbjct: 409 FERVMNQCFEIFSCWDD 425


>BT015990-1|AAV36875.1| 1449|Drosophila melanogaster RE54461p
           protein.
          Length = 1449

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 564 LVIVLERLEEVCVRFLKFSLTKVHFAAAFSDDTHDEWMWYC 442
           +V ++E LE+ C+RF+ FS      +  FS+    E  W C
Sbjct: 781 IVRLVEHLEQACIRFVHFSKENELRSRVFSEKMGLESGWNC 821


>AY051455-1|AAK92879.1| 1126|Drosophila melanogaster GH12050p
           protein.
          Length = 1126

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 564 LVIVLERLEEVCVRFLKFSLTKVHFAAAFSDDTHDEWMWYC 442
           +V ++E LE+ C+RF+ FS      +  FS+    E  W C
Sbjct: 458 IVRLVEHLEQACIRFVHFSKENELRSRVFSEKMGLESGWNC 498


>AE014134-732|AAN10345.1| 1126|Drosophila melanogaster CG3054-PB,
           isoform B protein.
          Length = 1126

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 564 LVIVLERLEEVCVRFLKFSLTKVHFAAAFSDDTHDEWMWYC 442
           +V ++E LE+ C+RF+ FS      +  FS+    E  W C
Sbjct: 458 IVRLVEHLEQACIRFVHFSKENELRSRVFSEKMGLESGWNC 498


>AE014134-731|AAF51018.3| 1449|Drosophila melanogaster CG3054-PA,
           isoform A protein.
          Length = 1449

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 564 LVIVLERLEEVCVRFLKFSLTKVHFAAAFSDDTHDEWMWYC 442
           +V ++E LE+ C+RF+ FS      +  FS+    E  W C
Sbjct: 781 IVRLVEHLEQACIRFVHFSKENELRSRVFSEKMGLESGWNC 821


>AE014297-922|AAF54368.1|  392|Drosophila melanogaster CG16755-PA
           protein.
          Length = 392

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 20/72 (27%), Positives = 37/72 (51%)
 Frame = +1

Query: 25  MMARYKQLLTYIKSAVTRNHSEKSINSILDYISTSRNMELLQDFYETTLEALKDAKNDRL 204
           ++ RY  L+TYI ++ T+  +    ++I      S N +L + + +TTL+ +    ND  
Sbjct: 72  LIMRYATLVTYIINSDTKFATVLQRSAI-----QSLNSKLAELYPKTTLDRIYHRVNDHY 126

Query: 205 WFKTNTKLGKLY 240
           W K+   L  +Y
Sbjct: 127 WTKSFVYLVIIY 138


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.317    0.133    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,202,048
Number of Sequences: 53049
Number of extensions: 415468
Number of successful extensions: 1285
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2193288294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)