Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0236
(565 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97190-1|AAB52366.2| 495|Caenorhabditis elegans Cop-9 signaloso... 295 1e-80
U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like ... 30 1.0
U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like ... 30 1.0
AF097737-1|AAD16170.1| 982|Caenorhabditis elegans hunchback-rel... 30 1.0
Z81554-3|CAB04505.1| 255|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z81117-5|CAB03321.1| 279|Caenorhabditis elegans Hypothetical pr... 29 2.3
AF026209-4|AAW88411.1| 317|Caenorhabditis elegans Serpentine re... 29 3.1
AF026209-3|AAK72080.3| 187|Caenorhabditis elegans Serpentine re... 29 3.1
U50301-1|AAB37051.1| 269|Caenorhabditis elegans Hypothetical pr... 28 4.0
AL032633-4|CAN86635.1| 179|Caenorhabditis elegans Hypothetical ... 28 4.0
U61947-2|AAB03135.1| 498|Caenorhabditis elegans Hypothetical pr... 28 5.3
AL137227-7|CAB70235.1| 787|Caenorhabditis elegans Hypothetical ... 28 5.3
AF016442-8|AAB65916.1| 881|Caenorhabditis elegans Hypothetical ... 28 5.3
Z81133-3|CAB03443.3| 527|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z66522-6|CAH04737.1| 1147|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z66522-5|CAA91405.1| 1149|Caenorhabditis elegans Hypothetical pr... 27 7.0
>U97190-1|AAB52366.2| 495|Caenorhabditis elegans Cop-9 signalosome
subunit protein 2 protein.
Length = 495
Score = 295 bits (725), Expect = 1e-80
Identities = 139/191 (72%), Positives = 163/191 (85%), Gaps = 3/191 (1%)
Frame = +1
Query: 1 FKLSNFTEMMARYKQLLTYIKSAVTRNHSEKSINSILDYISTSRNMELLQDFYETTLEAL 180
F + +M+ Y+QLLTYIKSAVT+N+SEKSIN+ILDYISTSR M+LLQ FYETTL+AL
Sbjct: 77 FGQNRLEKMLEYYRQLLTYIKSAVTKNYSEKSINAILDYISTSRQMDLLQHFYETTLDAL 136
Query: 181 KDAKNDRLWFKTNTKLGKLYYDRGDFNKLAKILKQLHQSCQTDEGEDDLKKGTQLLEIYA 360
KDAKN+RLWFKTNTKLGKL++D +F KL KI+KQL SC+ ++GE+D +KGTQLLEIYA
Sbjct: 137 KDAKNERLWFKTNTKLGKLFFDLHEFTKLEKIVKQLKVSCKNEQGEEDQRKGTQLLEIYA 196
Query: 361 LEIQMYTAQKNNKKLKALYE---QSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 531
LEIQMYT QKNNK LK +YE Q++H KSAIPHPLI+G IRECGGKMHLR+G F AHT
Sbjct: 197 LEIQMYTEQKNNKALKWVYELATQAIHTKSAIPHPLILGTIRECGGKMHLRDGRFLDAHT 256
Query: 532 DFFEAFKNYDE 564
DFFEAFKNYDE
Sbjct: 257 DFFEAFKNYDE 267
>U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform b protein.
Length = 960
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 437 FMCRDCSYNAFNFLLFFCAVY 375
FMC DC Y AFN L F +Y
Sbjct: 935 FMCSDCQYQAFNELSFALHMY 955
>U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like (fly
gap gene related)protein 1, isoform a protein.
Length = 982
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 437 FMCRDCSYNAFNFLLFFCAVY 375
FMC DC Y AFN L F +Y
Sbjct: 957 FMCSDCQYQAFNELSFALHMY 977
>AF097737-1|AAD16170.1| 982|Caenorhabditis elegans hunchback-related
protein protein.
Length = 982
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 437 FMCRDCSYNAFNFLLFFCAVY 375
FMC DC Y AFN L F +Y
Sbjct: 957 FMCSDCQYQAFNELSFALHMY 977
>Z81554-3|CAB04505.1| 255|Caenorhabditis elegans Hypothetical
protein F57G4.6 protein.
Length = 255
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Frame = +1
Query: 157 YETTLEALKDAKNDRLWFKTNTKLGKLYYDRGD-----FNKL-AKILKQLHQSCQTDEGE 318
Y+ T + KD + W K LG L DRG +N L ++ L+ + C + G
Sbjct: 51 YDLTDKHYKDREKHDFWIKIEKDLGFLAEDRGSNAIKIWNSLKSEYLRARKKKCPSGSGL 110
Query: 319 DDLK 330
DD++
Sbjct: 111 DDIE 114
>Z81117-5|CAB03321.1| 279|Caenorhabditis elegans Hypothetical
protein T06E6.11 protein.
Length = 279
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -1
Query: 370 VSQEHIFLVVAFLS*DHLHLHQSDNSDVVVSIFLLAC 260
++Q+ IF +S H+H H+ SDV S+FLLAC
Sbjct: 102 INQDRIFATCFPIS-YHIHRHKISTSDV--SLFLLAC 135
>AF026209-4|AAW88411.1| 317|Caenorhabditis elegans Serpentine
receptor, class h protein2, isoform b protein.
Length = 317
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = -3
Query: 434 MCRDCSYNAFN---FLLFFCAVYICISRAYI 351
+C C + ++ FL++F YICI+ AYI
Sbjct: 178 LCDSCVFMIYDSPIFLIWFLVAYICIALAYI 208
>AF026209-3|AAK72080.3| 187|Caenorhabditis elegans Serpentine
receptor, class h protein2, isoform a protein.
Length = 187
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = -3
Query: 434 MCRDCSYNAFN---FLLFFCAVYICISRAYI 351
+C C + ++ FL++F YICI+ AYI
Sbjct: 48 LCDSCVFMIYDSPIFLIWFLVAYICIALAYI 78
>U50301-1|AAB37051.1| 269|Caenorhabditis elegans Hypothetical
protein F20D6.6 protein.
Length = 269
Score = 28.3 bits (60), Expect = 4.0
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Frame = +1
Query: 58 IKSAVTRNHSEKSINSILDYISTSRNMELLQDFYETTLEALK-DAKNDRLWFKTNTKLGK 234
I S VT N ++ + I+ + S +M ++ + E + KN + + TKL K
Sbjct: 171 IPSPVTPNKIDEE-SKIIKELLKSMDMSMMINSNNVVREGYRFTLKNQLITITSGTKLQK 229
Query: 235 LYYDRGDFNKLAKILKQLHQSCQTDEGED 321
Y +RG + + K +S Q +GED
Sbjct: 230 NYNNRGVVMMMDRHNKVNFKSIQGIDGED 258
>AL032633-4|CAN86635.1| 179|Caenorhabditis elegans Hypothetical
protein Y106G6A.5b protein.
Length = 179
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 85 SEKSINSILDYISTSRNMELLQDFYETTLEALKD-AKNDRLWFKTNTKLGK 234
SE S S+ + ++TS ELLQ+F E ++ A+ RL +T++G+
Sbjct: 6 SEVSTESVNEILNTSAGNELLQNFQNLITEVEENGAEGGRLANLCSTRMGR 56
>U61947-2|AAB03135.1| 498|Caenorhabditis elegans Hypothetical
protein C06G3.6 protein.
Length = 498
Score = 27.9 bits (59), Expect = 5.3
Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 11/128 (8%)
Frame = +1
Query: 1 FKLSNFTEMMARYKQLLTYIKSAVTRNHSEKSINSILDYISTSRNMELLQDFYETTLEAL 180
F LS + R K+ K + + + + I+ N D +E +
Sbjct: 365 FDLSASRQEFIREKEKFRVEKETLMKQKEQIEEMMKQETINFETNRAFFSDRFEPIFNKV 424
Query: 181 KDAKND------RLWFKTNTKL----GKLYYDRGDFNKLAKILKQLHQ-SCQTDEGEDDL 327
KD K ++ F+ T G ++ D + LA+ILK + + C ++ +D
Sbjct: 425 KDGKKSEDDTTRKVEFEVETAESNYPGSIFSDEDSLSDLAEILKDIEEYECSSESSDDQE 484
Query: 328 KKGTQLLE 351
K ++E
Sbjct: 485 KDDFDVVE 492
>AL137227-7|CAB70235.1| 787|Caenorhabditis elegans Hypothetical
protein F58D5.6 protein.
Length = 787
Score = 27.9 bits (59), Expect = 5.3
Identities = 42/192 (21%), Positives = 78/192 (40%), Gaps = 16/192 (8%)
Frame = +1
Query: 7 LSNFTEMMARYKQLLTYIKSAVTRNHSEKSINSILDYISTSRNMELLQDF----YETTLE 174
L N++ + + + + S T + + S+ +S + L + YE LE
Sbjct: 183 LRNYSASIIQTSTVALTLNSQKTMLEFDVKLKSLSQKVSELVKLNSLMSYNLISYENLLE 242
Query: 175 ALKDAK--NDRLWFKTNTKLGKLYYDRGDFNKLAKILKQ-------LHQSCQTDEGEDDL 327
A + K ++ + ++N G + + F L+ +LK + S + +
Sbjct: 243 AHEFFKQWSELKFVESNPTSGAFKHGKYPFRFLSGVLKSRETWTKLANDSPTIPSFSNTI 302
Query: 328 KKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGV---IRECGGKMH 498
++ ++L + Y E + K +KLKAL Q K +I ++ RE KM
Sbjct: 303 EQSSKLNKYYEPEKLFTSLPKCVEKLKALKTQPDFDKLSIIDSVVNTFHENARELHDKMS 362
Query: 499 LREGEFEKAHTD 534
GEF K +TD
Sbjct: 363 NVHGEFSKVYTD 374
>AF016442-8|AAB65916.1| 881|Caenorhabditis elegans Hypothetical
protein K12B6.1 protein.
Length = 881
Score = 27.9 bits (59), Expect = 5.3
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = +1
Query: 10 SNFTEMMARYKQLLTYIKSAVTRNHSE-KSINSILDYISTSRNMELLQDFYETTLEALKD 186
S F A +QL+ +I ++ H+E K + D ++ QD T L
Sbjct: 537 SIFENAKAANRQLIMFITKSMNNYHTEIKCLEQEFDLLT--------QDIRFETAVKLAQ 588
Query: 187 AKNDR--LWFKTNTKLGKLYYD 246
+N R + +KTN KLG L Y+
Sbjct: 589 QQNTRKNIIYKTNMKLGGLNYE 610
>Z81133-3|CAB03443.3| 527|Caenorhabditis elegans Hypothetical
protein T28B8.5 protein.
Length = 527
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 205 WFKTNTKLGKLYYDRGDFNKLAK 273
W+K NT L ++YY+R +F L +
Sbjct: 404 WYKANTILIEIYYERMNFQVLTE 426
>Z66522-6|CAH04737.1| 1147|Caenorhabditis elegans Hypothetical protein
F14E5.2b protein.
Length = 1147
Score = 27.5 bits (58), Expect = 7.0
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
Frame = +1
Query: 154 FYETTLEALKDAKNDRLWFKTNTKLGKLYYDRGDFNKL-----AKILKQLHQSCQT---- 306
FY +EA+ ++ +D L K +GK + N L KI++ L + C+
Sbjct: 817 FYREKIEAVDNSMDDELQKKCRYDIGKFCANSDSENVLECLTNTKIVRLLQRECKAIVKE 876
Query: 307 --DEGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSL 429
E D++ QLL E + Y + K Y Q++
Sbjct: 877 RMQESARDVRLRPQLLTSCRKEAEQYCPEDMKKINMPQYSQTV 919
>Z66522-5|CAA91405.1| 1149|Caenorhabditis elegans Hypothetical protein
F14E5.2a protein.
Length = 1149
Score = 27.5 bits (58), Expect = 7.0
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
Frame = +1
Query: 154 FYETTLEALKDAKNDRLWFKTNTKLGKLYYDRGDFNKL-----AKILKQLHQSCQT---- 306
FY +EA+ ++ +D L K +GK + N L KI++ L + C+
Sbjct: 819 FYREKIEAVDNSMDDELQKKCRYDIGKFCANSDSENVLECLTNTKIVRLLQRECKAIVKE 878
Query: 307 --DEGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSL 429
E D++ QLL E + Y + K Y Q++
Sbjct: 879 RMQESARDVRLRPQLLTSCRKEAEQYCPEDMKKINMPQYSQTV 921
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.133 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,610,505
Number of Sequences: 27780
Number of extensions: 220162
Number of successful extensions: 776
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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