Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0236
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.70 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    24   0.92 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   4.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   8.6  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   8.6  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   8.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 512  SPSRRCILPPHSLMTPMMSGCGIADFMCRDCSYNAFNF 399
            +P+RRC  PP       +S  G+ D +C   +++   F
Sbjct: 1696 APNRRCPPPPRMGSAEGLSHRGMEDEICPYATFHLLGF 1733


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 91  KSINSILDYISTSRNMELLQDFYET 165
           +S+  +L  +    N  LL+D YET
Sbjct: 103 RSLEKLLCNVEAEENYNLLEDIYET 127


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -3

Query: 482 HSLMTPMMSGCGIADFMCRDCSYNAFN 402
           H L   + +  G   F C  CSY+  N
Sbjct: 2   HHLEYHLRNHFGSKPFKCEKCSYSCVN 28


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -3

Query: 80  FLVTALLMYVKSCLYLAIISVKL 12
           F+V+ LLM V   +Y+++   ++
Sbjct: 186 FIVSGLLMLVGMVMYISVFKAEV 208


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 160 ETTLEALKDAKNDRLWFKTNTKLGKL 237
           ETTL+ L D  +DR +     K  ++
Sbjct: 402 ETTLKHLIDVASDRFFITDGEKAARM 427


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 160 ETTLEALKDAKNDRLWFKTNTKLGKL 237
           ETTL+ L D  +DR +     K  ++
Sbjct: 402 ETTLKHLIDVASDRFFITDGEKAARM 427


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.133    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,936
Number of Sequences: 438
Number of extensions: 2629
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)