Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0236
(565 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g26990.1 68415.m03241 COP9 signalosome complex subunit 2 / CS... 269 1e-72
At2g46970.1 68415.m05867 basic helix-loop-helix (bHLH) protein, ... 30 0.93
At5g16850.1 68418.m01974 telomerase reverse transcriptase (TERT)... 30 1.2
At4g06526.1 68417.m00938 hypothetical protein 30 1.2
At1g72860.1 68414.m08427 disease resistance protein (TIR-NBS-LRR... 29 1.6
At1g79310.1 68414.m09243 latex-abundant protein, putative (AMC4)... 29 2.8
At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein ... 28 3.7
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi... 28 5.0
At1g77500.1 68414.m09025 expressed protein contains Pfam domains... 28 5.0
At5g37920.1 68418.m04568 hypothetical protein contains Pfam PF04... 27 6.5
At1g64900.1 68414.m07357 cytochrome P450, putative similar to cy... 27 6.5
At2g19360.1 68415.m02259 hypothetical protein contains Pfam prof... 27 8.7
At1g50460.1 68414.m05656 hexokinase, putative similar to hexokin... 27 8.7
>At2g26990.1 68415.m03241 COP9 signalosome complex subunit 2 / CSN
complex subunit 2 (CSN2) proteasome, COP9-complex and
eIF3-domain protein; identical to CSN complex subunit 2
[Arabidopsis thaliana] GI:18056655; identical to cDNA
CSN complex subunit 2 (CSN2) GI:18056654
Length = 439
Score = 269 bits (659), Expect = 1e-72
Identities = 120/190 (63%), Positives = 160/190 (84%), Gaps = 2/190 (1%)
Frame = +1
Query: 1 FKLSNFTEMMARYKQLLTYIKSAVTRNHSEKSINSILDYIS--TSRNMELLQDFYETTLE 174
++L + EMM Y ++LTYIKSAVTRN+SEK IN+I+D++S S+N LLQ+FY+TTL+
Sbjct: 74 YRLGKYKEMMEAYTEMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNTGLLQEFYQTTLK 133
Query: 175 ALKDAKNDRLWFKTNTKLGKLYYDRGDFNKLAKILKQLHQSCQTDEGEDDLKKGTQLLEI 354
AL++AKN+RLWFKTN KL +++D G++ ++ KILK+LH+SCQ ++G DD KKG+QLLE+
Sbjct: 134 ALEEAKNERLWFKTNLKLCNIWFDIGEYRRMTKILKELHKSCQKEDGTDDQKKGSQLLEV 193
Query: 355 YALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTD 534
YA+EIQ+YT K+NKKLK LY ++L IKSAIPHP IMG+IRECGGKMH+ E ++E+A TD
Sbjct: 194 YAIEIQIYTETKDNKKLKQLYHKALAIKSAIPHPRIMGIIRECGGKMHMAERQWEEAATD 253
Query: 535 FFEAFKNYDE 564
FFEAFKNYDE
Sbjct: 254 FFEAFKNYDE 263
>At2g46970.1 68415.m05867 basic helix-loop-helix (bHLH) protein,
putative similar to PIF3 like basic Helix Loop Helix
protein (PIL1) [Arabidopsis thaliana] GI:22535492;
contains Myc-type, 'helix-loop-helix' dimerization
domain signature, PROSITE:PS00038
Length = 416
Score = 30.3 bits (65), Expect = 0.93
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 211 KTNTKLGKLYYD--RGDFNKLAKILKQLHQSCQTDEGEDDLKKGTQLLEIYALEIQM 375
K +T++ KLY R +FNK + L+ L +C D+ L + + + L++QM
Sbjct: 228 KRSTEVHKLYERKRRDEFNKKMRALQDLLPNCYKDDKASLLDEAIKYMRTLQLQVQM 284
>At5g16850.1 68418.m01974 telomerase reverse transcriptase (TERT)
identical to telomerase reverse transcriptase
[Arabidopsis thaliana] GI:5880683
Length = 1123
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 31 ARYKQLLTYIKSAVTRNHSEKSINSILDYISTSRNMELL 147
+RY+ LL Y+KSA++++ + ++S L Y + N L
Sbjct: 1080 SRYRMLLIYLKSALSKHSLSQQLSSELRYATDRSNSSSL 1118
>At4g06526.1 68417.m00938 hypothetical protein
Length = 506
Score = 29.9 bits (64), Expect = 1.2
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -3
Query: 530 VCAFSNSPSRRCILPPHSLMTPMMSGC 450
+C+ ++ P++ C+ PPH++ P M C
Sbjct: 284 ICSHTDHPTKECLYPPHTM--PYMDDC 308
>At1g72860.1 68414.m08427 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1163
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 352 IYALEIQMYTAQKNNKKLKALYEQSLHIKSAI 447
+YAL + YTA + K +Y+ S HIKS +
Sbjct: 542 VYALHLGGYTAYHDTLKFLKIYKHSNHIKSKL 573
>At1g79310.1 68414.m09243 latex-abundant protein, putative (AMC4) /
caspase family protein similar to latex-abundant protein
[Hevea brasiliensis] gb:AAD13216; contains Pfam profile
PF00656: ICE-like protease (caspase) p20 domain
Length = 403
Score = 28.7 bits (61), Expect = 2.8
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Frame = +1
Query: 124 TSRNMELLQDFYETTLEALKDAKNDRLWFK----TNTKLGKLYYDRGDFNKLAKILKQLH 291
T+ LL E+ +++ ND + K K + Y N L L
Sbjct: 268 TNDQSTLLGKIEESARGYIEETLNDEHYMKPAMQAQVKSDREIYGGRSSNGLFPDRGILL 327
Query: 292 QSCQTDEGEDDLKKGTQLLEIYALEIQMYTAQKNNK 399
CQTDE D+KK + ++ IQM ++ ++K
Sbjct: 328 SGCQTDETSADVKKKGEAFGAFSNAIQMVLSETDHK 363
>At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 381
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 539 KKSVCAFSNSPSRRCILPPHSLMTPMMSGCG 447
K+ VC F++SP + +LPP S + GCG
Sbjct: 149 KRKVCFFAHSPRQLRVLPP-SPENHISGGCG 178
>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
protein contains similarity to 67kD chloroplastic
RNA-binding protein, P67.1 [Raphanus sativus]
GI:9755886; contains Pfam profile PF01535: PPR repeat
Length = 711
Score = 27.9 bits (59), Expect = 5.0
Identities = 18/67 (26%), Positives = 35/67 (52%)
Frame = +1
Query: 88 EKSINSILDYISTSRNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYYDRGDFNKL 267
E + ++ILD S S +E + YE + K D + F LGK++ + GD++ +
Sbjct: 256 EVTYSAILDVYSKSGKVEEVLSLYERAVAT--GWKPDAIAFSV---LGKMFGEAGDYDGI 310
Query: 268 AKILKQL 288
+L+++
Sbjct: 311 RYVLQEM 317
>At1g77500.1 68414.m09025 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 879
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +1
Query: 343 LLEIYALEIQMYTAQKNNKKLKALYEQ 423
L ++YA E ++Y K+ +KL+A+YE+
Sbjct: 546 LEKLYAWEKKLYKEVKDEEKLRAIYEE 572
>At5g37920.1 68418.m04568 hypothetical protein contains Pfam PF04510
: Family of unknown function (DUF577)); common family
comprised of At5g37410, At5g37400, At5g37920,
At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
contains Pfam PF04510 : Family of unknown function
(DUF577)
Length = 609
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 22 EMMARYKQLLTYIKSAVTRNHSEKSINSILDYISTSRNMELLQDFYETTLE 174
E++ + L T + T++H E+ + D++ ++ELL+ F T LE
Sbjct: 299 ELVTKINMLFTKQQPHETQDHGEEFDRAWYDHLKYLSSLELLKIFASTDLE 349
>At1g64900.1 68414.m07357 cytochrome P450, putative similar to
cytochrome p450 GI:438240 from [Solanum melongena]
Length = 506
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/82 (20%), Positives = 40/82 (48%)
Frame = +1
Query: 76 RNHSEKSINSILDYISTSRNMELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYYDRGD 255
R+ E + + Y+ T ++EL ++ + E + + ++ L T+T L + +
Sbjct: 262 RSEQEDKKDYVQSYVDTLLDLELPEENRKLNEEDIMNLCSEFLTAGTDTTATALQWIMAN 321
Query: 256 FNKLAKILKQLHQSCQTDEGED 321
K +I ++LH+ ++ GE+
Sbjct: 322 LVKYPEIQERLHEEIKSVVGEE 343
>At2g19360.1 68415.m02259 hypothetical protein contains Pfam profile
PF03080: Arabidopsis proteins of unknown function
Length = 426
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +1
Query: 157 YETTLEALKDAKNDRLWFKTNTKLGKLYYDRGDFNKLAKILKQLH 291
YE KD + W K T L Y+ FN+L Q+H
Sbjct: 293 YEIFTSIWKDRSSGNWWLKFGTHLIVGYWPSSLFNRLGDAASQVH 337
>At1g50460.1 68414.m05656 hexokinase, putative similar to hexokinase
1 [Spinacia oleracea] Swiss-Prot:Q9SEK3
Length = 498
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +1
Query: 226 LGKLYYDRGDFNKLAKILKQLHQSCQTDEGEDDLKKGTQLLEIYALEIQMYTAQKNNKKL 405
+G+ R + + +ILK+L C T G + Q+++ A+E+ A + KL
Sbjct: 24 VGRRMKSRRKWRTVVEILKELEDDCDTPVG-----RLRQVVDAMAVEMHAGLASEGGSKL 78
Query: 406 KAL 414
K L
Sbjct: 79 KML 81
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.133 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,715,667
Number of Sequences: 28952
Number of extensions: 198118
Number of successful extensions: 635
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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