Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0234
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subun...    32   0.089
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    27   1.9  

>SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subunit
           Cgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 412

 Score = 31.9 bits (69), Expect = 0.089
 Identities = 22/77 (28%), Positives = 37/77 (48%)
 Frame = +1

Query: 145 LQTITNPDGSVSLIQVDPNNPIITLPDGTTAHVIQSGEGGASVVGALDTDGAVAVDLNAV 324
           LQT+    GS+ + Q D  N    + DG  A V+++G+G    +   D  G +A+    V
Sbjct: 294 LQTVVYQAGSIVIRQGDIGNQFYLIEDG-EAEVVKNGKGVVVTLTKGDYFGELALIHETV 352

Query: 325 AEATLNHEGQIILTADD 375
             AT+  + ++ L   D
Sbjct: 353 RNATVQAKTRLKLATFD 369


>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 15/123 (12%)
 Frame = +1

Query: 145 LQTITNPDGSVSL-IQVDPNNPIITLPDGTTAHVIQSGEGG----------ASVVGALDT 291
           ++TI+   G+ ++ I VDP    + +P+ T  HV+++   G           +V G  + 
Sbjct: 379 IETISKAYGNQAVVISVDPKRQYVKVPEDTKHHVVKTSRLGPNGEAYCWYQCTVKGGREY 438

Query: 292 DGAVAVDLNAVAEATLNHEGQIILTA--DDGH--GYPVSVSGVITVPVSASVYQSMVASM 459
                V+L    EA     G+++L     DG   GY + +  ++   V+  V  S  A +
Sbjct: 439 RDIDVVELTRACEAM--GAGEVLLNCMDQDGSNAGYDIELVRLVKNSVNIPVIASSGAGI 496

Query: 460 HHH 468
             H
Sbjct: 497 PQH 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,093,041
Number of Sequences: 5004
Number of extensions: 38139
Number of successful extensions: 127
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)