Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0234
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4196| Best HMM Match : No HMM Matches (HMM E-Value=.)               84   9e-17
SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015)                     32   0.38 
SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)                    31   1.1  
SB_57480| Best HMM Match : MFS_1 (HMM E-Value=0.0025)                  29   2.7  
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)            29   2.7  
SB_27113| Best HMM Match : Str_synth (HMM E-Value=0)                   29   3.5  
SB_17136| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_24326| Best HMM Match : DENN (HMM E-Value=0)                        28   6.1  
SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_22896| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_2929| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.1  
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.1  
SB_48110| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_14895| Best HMM Match : CcmE (HMM E-Value=5.3)                      28   8.1  

>SB_4196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 474

 Score = 84.2 bits (199), Expect = 9e-17
 Identities = 40/75 (53%), Positives = 51/75 (68%)
 Frame = +1

Query: 1   KMSWTHALRQIVINCYKYHGREDLLPAFTEEDEKGPPTQPMSQYAPAVLQTITNPDGSVS 180
           K+SWT+ALRQIV NCYKYHGREDLLP F E D         + +   ++ TI+N DG+VS
Sbjct: 232 KVSWTNALRQIVKNCYKYHGREDLLPLFAEND--AVQQHQYAHHPQQMVHTISNADGTVS 289

Query: 181 LIQVDPNNPIITLPD 225
           LIQVD +  + T+ D
Sbjct: 290 LIQVDASGAVSTIAD 304


>SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015)
          Length = 779

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -1

Query: 524 TGSQCRSVTCTSGATQTASWWCMEATMDWYTEADTGTVMTPDTDT 390
           T ++C SVTC + AT T  +    ATM   T+  + T  T  T T
Sbjct: 278 TNTKCYSVTCATVATNTKCYSATRATMATNTKCYSATCATMATST 322


>SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)
          Length = 843

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 497 RSRCDTDYQCHYVKDYIYRYNVV*TVVLITEMSTPQCTRASTLSELVPLVH 649
           RSR   + +CH +  ++ R NV  T+V    +++   TR +    LV   H
Sbjct: 219 RSRAHREKRCHVICKHVTRTNVTKTLVTRCHVTSKHVTRTNVSKTLVTRCH 269


>SB_57480| Best HMM Match : MFS_1 (HMM E-Value=0.0025)
          Length = 930

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = +1

Query: 151 TITNPD--GSVSLIQVD-PNNPIITLPD--GTTAHVIQSGEGGASVVGALDTDGAVAVDL 315
           TI  PD  G  +++  D P+   I  PD  G    V    +G A++VG  + D A  V  
Sbjct: 425 TIVGPDEQGEATIVGPDEPDEATIVGPDEQGEATIVGPDEQGEATIVGPDEPDEATIVGP 484

Query: 316 NAVAEATL 339
           N   EAT+
Sbjct: 485 NEQGEATI 492


>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
          Length = 509

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/61 (29%), Positives = 22/61 (36%)
 Frame = +1

Query: 52  YHGREDLLPAFTEEDEKGPPTQPMSQYAPAVLQTITNPDGSVSLIQVDPNNPIITLPDGT 231
           +H R  LLP+      + PP  P  Q       T T P  +       P  P  T P  T
Sbjct: 13  HHQRPPLLPSQQIPHHQRPPLLPSQQLPHNRTTTPTTPTTTTPPATTTPTKPTNTTPPAT 72

Query: 232 T 234
           T
Sbjct: 73  T 73


>SB_27113| Best HMM Match : Str_synth (HMM E-Value=0)
          Length = 607

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = -3

Query: 345 VVERGLGDG--VEVHGDGAVRVQRP--HHAGSAFAGLDHVRGGPVGQR 214
           ++  GL DG  V+  GD  V V R   H+ G     L+HV G P+G R
Sbjct: 69  IIYTGLADGRIVKFVGDKVVDVVRTGTHNDGCGRPELEHVCGRPLGMR 116


>SB_17136| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 974

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -3

Query: 213 DDGVVGVHLDEGDAPVGVGDGLQHGGSV 130
           DDGVV   +D  +  VG GDG+  GGSV
Sbjct: 710 DDGVVVEEVDADEVGVGAGDGV--GGSV 735


>SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 654

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 12/122 (9%)
 Frame = +1

Query: 184 IQVDPNNPIITLPDGTTAHVIQSGEGGAS----VVGALDTDGAVAVDLNAVAEATLNHEG 351
           I+   N  + T P GT   VI + +  A     V+ ++  +G +AVD       +L+  G
Sbjct: 348 IRTTYNLSVHTAP-GTQLDVITTTDKDAGYNSIVIYSVSANGVIAVD---AVTGSLSLIG 403

Query: 352 QIILTADDGHGYPVS-----VSGVITVPVSASVYQSMVASMHHHEAVCVAP---LVQVTL 507
           Q++ T  D H   +      ++ +IT P   ++   +   +HHH A+  +P   +V +T+
Sbjct: 404 QLLAT--DYHIISIIFIISVITVIITTPSCIAIITVIHHPLHHHPALPSSPSFIIVSITI 461

Query: 508 RH 513
            H
Sbjct: 462 LH 463


>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
 Frame = +1

Query: 154  ITNPDGSVSLIQVDPNNPIITLPDGTTAHVIQS----GEGGASVVGALDTDGAVAVDLNA 321
            + NP+ + SLI    +N ++ +PD  T  +I +    G    SV+   ++DG V + +  
Sbjct: 1939 VENPE-TFSLILACADNDVVVVPDTVTVTIIDNDAVVGFKPDSVI-FKESDGTVTLTVAR 1996

Query: 322  VAEATLNHEGQIIL---TADDGHGYPVSVSGVITVPVSASVYQSMVASM 459
              + T  H+ ++ +   +A DG  +       +T P ++   Q++  S+
Sbjct: 1997 RGDTTREHKVKVAVIDGSAIDGKDFTKPSIAELTFPANSLDDQTITVSI 2045


>SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 995

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -1

Query: 251 DWITCAVVPSGSV-MMGLLGSTWMRETLPSGLVMVCS 144
           D I CA  P G V ++G    TW  ++LP G    C+
Sbjct: 405 DGIKCAECPPGQVALLGKHYYTWSEDSLPEGFSAGCA 441


>SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3824

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
 Frame = +1

Query: 175 VSLIQVDPNNPIITLPDGTTAHVIQSGEGGASVVGALDTDGAVAVDLNAVAEATLNHEGQ 354
           + ++ V+ NNP+I        HV  +  GG+  V    T G     ++ V++A     G+
Sbjct: 446 IEVLDVNDNNPVI--------HVSYT-LGGSYQVTENATIGTQVARVS-VSDADSGKNGE 495

Query: 355 IILTADDGHGYPVSVSGVITVPVSASVYQSMVASMHHH---EAVCV 483
           + +T + G GY      V+      +V QS+    H H   +AVC+
Sbjct: 496 VNVTLEGGDGYFSMKFDVLNDESIIAVGQSLDRETHDHFFLKAVCI 541


>SB_24326| Best HMM Match : DENN (HMM E-Value=0)
          Length = 1281

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = -1

Query: 515 QCRSVTCTSGATQTASWWCMEATMDWYTEADTGTVMTPDTDTG*PCPSSAVRMICPS 345
           +C SVTC      T    C   + D    + +  V+ P       CPS +  MICPS
Sbjct: 787 RCVSVTCCVSLL-TRDVLCPSMSRDVLCPSMSRDVLCPSMSRDMICPSMSRDMICPS 842


>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1778

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = +1

Query: 250 SGEGGASVVGALDTDGAVA-VDLNAVAEATLNHEGQIILTADDGHGYPVSVSGVITVPVS 426
           S  G AS   ++D D     V++    +  LNH   I  T   G+ Y +  S    VP  
Sbjct: 100 SVSGSASGEPSVDMDELEKIVNIERKKKFKLNHTADIFSTNTQGYPYQMPYSAAHQVPYG 159

Query: 427 ASVYQS 444
            + YQ+
Sbjct: 160 ITTYQA 165


>SB_22896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 309 HGDGAVRVQRPHHAGSAFAGLDHVRG 232
           HG  A  +QRP H  +A    DHV G
Sbjct: 19  HGTHAHTIQRPRHVATACRICDHVMG 44


>SB_2929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
 Frame = +1

Query: 139 AVLQTITNPDGSVSLIQVDPNNPIITLPDGTTAHVIQSGEGGASVVGALDTDGA--VAVD 312
           A +  +   DG++S +   P  PI  L +   +  I  GE GA   GA+D        VD
Sbjct: 139 AFINILNGKDGNLSHLVTVPPGPI--LSNALVSSAIVVGEDGA---GAMDMGSGFEFGVD 193

Query: 313 LNAVAEATL----NHEGQIILTADDGHGYPVSVSGVITVPVSAS 432
            NA  E  L    + E Q     ++         G +T PV AS
Sbjct: 194 PNADPELALALRVSMEEQRQRQEEESRATGTPAEGGLTTPVQAS 237


>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3297

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 3/125 (2%)
 Frame = +1

Query: 61   REDLLPAFTEEDEKGPPTQPMSQYAPAVLQTITNPDGSVSL-IQVDPNNPIITLPDGTTA 237
            R    P  T+E    P +   +   P       + DG+ +  +  D    +    DGTTA
Sbjct: 2097 RTTAAPMITDETSAAPMSTDGTTAVPM------STDGTTAAPMSTDGTTAVPMSTDGTTA 2150

Query: 238  HVIQSGEGGASVVGALDTDGAVAVDLNAVAEATLNHEGQ--IILTADDGHGYPVSVSGVI 411
              I S +G  +     D   AV +  +    A ++ +G   + ++ D     P+S  G  
Sbjct: 2151 API-STDGTTAAPMITDGTTAVPMSTDGTTAAPMSTDGTTAVPMSTDGTTAAPISTDGTT 2209

Query: 412  TVPVS 426
              P+S
Sbjct: 2210 AAPMS 2214


>SB_48110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 464 WCMEATMDWYTEADTGTVMTPDTDT 390
           W +E T+DW  + + G+ M P  D+
Sbjct: 167 WTLELTLDWNLDPELGSGMDPGMDS 191


>SB_14895| Best HMM Match : CcmE (HMM E-Value=5.3)
          Length = 485

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
 Frame = -3

Query: 351 PLVVERGLGDGVEVHGDGAVRVQRPHHAGSAFAGLDHVRGGPVGQRDDGVVGVHLDE--- 181
           P  +  GL DG +       +VQ+  H G A   +  + G  +G+   G   + +DE   
Sbjct: 296 PFGLITGLKDGAKDLFYEPYQVQQVAHTGGAAGAVSRITG-TIGK---GFAALSMDEKYQ 351

Query: 180 -------GDAPVGVGDGLQHGGSVL 127
                  G  PV VG+GL  GG  L
Sbjct: 352 QERRQAMGKKPVNVGEGLARGGKGL 376


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,989,024
Number of Sequences: 59808
Number of extensions: 347218
Number of successful extensions: 1401
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1390
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)