Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0234
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41007-2|AAA82265.1|  248|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AL117203-9|CAB60420.3|  675|Caenorhabditis elegans Hypothetical ...    27   9.4  

>U41007-2|AAA82265.1|  248|Caenorhabditis elegans Hypothetical
           protein C33H5.6 protein.
          Length = 248

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 23/111 (20%), Positives = 48/111 (43%)
 Frame = +1

Query: 64  EDLLPAFTEEDEKGPPTQPMSQYAPAVLQTITNPDGSVSLIQVDPNNPIITLPDGTTAHV 243
           E+L+    E  +   P++  ++ +  +L    + DG+  ++  +    +  L DG+    
Sbjct: 5   EELITVQPEAFKALTPSKKFNETSNKLLDLAYSDDGNNLIVSAEDVVLVYDLRDGSKGKS 64

Query: 244 IQSGEGGASVVGALDTDGAVAVDLNAVAEATLNHEGQIILTADDGHGYPVS 396
           I+  + G + +  LDT   V    N      L+ + +  +   DGH  PV+
Sbjct: 65  IECKKYGVNCLEYLDTVKCVHSGPNDTTIRLLHLQKKSYVRYFDGHRMPVN 115


>Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical
           protein B0250.1 protein.
          Length = 260

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +1

Query: 169 GSVSLIQVDPNNPIITLPDGTTAHVIQSGEGGASVVGALDTDGAVAVDLNAVAEAT 336
           G+ + IQ+    P+ TLP+GTT   +++  G   V+     + A  +  N   + T
Sbjct: 91  GAKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIARASGNYATVIAHNPDTKKT 146


>AL117203-9|CAB60420.3|  675|Caenorhabditis elegans Hypothetical
           protein Y48C3A.12 protein.
          Length = 675

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
 Frame = +1

Query: 55  HGREDLLPAFTEE--DEKGPPTQPMSQYAPAVLQTITNPDGSVSLIQVDPNNPIITLPDG 228
           H ++   P   EE     GPP QP S   PA++ T T+            N    ++P  
Sbjct: 391 HIQQQQQPVVFEEILTANGPPPQPSSPLLPALITTTTSAPTIAPASSPIINASGSSIPAA 450

Query: 229 TTAHVIQSGEGGASVVGALDTDGAVA 306
           +T+ +     GG  V  +L T    A
Sbjct: 451 STSGISLFPSGG--VTSSLTTPSTTA 474


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,170,137
Number of Sequences: 27780
Number of extensions: 237761
Number of successful extensions: 927
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)