Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0234
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.7  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   4.7  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 174 APVGVGDGLQHGGSVLRHG 118
           +P  + DG + GGS L HG
Sbjct: 420 SPSSLADGARFGGSCLIHG 438


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 174 APVGVGDGLQHGGSVLRHG 118
           +P  + DG + GGS L HG
Sbjct: 420 SPSSLADGARFGGSCLIHG 438


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 288 VQRPHHAGSAFAGLDHVRGGPVGQR 214
           +QR    G+ + GL+H   GP  Q+
Sbjct: 742 LQRGQETGAEWPGLEHANIGPYIQK 766


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 49  KYHGREDLLPAFTEEDEKGPPTQPMSQYAPAVLQ 150
           KY+GRED +P     +   P  + + Q A   L+
Sbjct: 26  KYNGREDQIPREMNTERLLPYVEIIEQPASKALR 59


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 49  KYHGREDLLPAFTEEDEKGPPTQPMSQYAPAVLQ 150
           KY+GRED +P     +   P  + + Q A   L+
Sbjct: 26  KYNGREDQIPREMNTERLLPYVEIIEQPASKALR 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,524
Number of Sequences: 438
Number of extensions: 2998
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)