Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0234
(683 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g25750.1 68417.m03707 ABC transporter family protein Bactroce... 31 0.94
At4g01985.1 68417.m00265 expressed protein 28 6.6
At1g06520.1 68414.m00691 phospholipid/glycerol acyltransferase f... 28 6.6
At5g42940.1 68418.m05235 zinc finger (C3HC4-type RING finger) fa... 27 8.8
At5g16880.2 68418.m01979 VHS domain-containing protein / GAT dom... 27 8.8
At5g16880.1 68418.m01978 VHS domain-containing protein / GAT dom... 27 8.8
At4g13940.1 68417.m02157 adenosylhomocysteinase / S-adenosyl-L-h... 27 8.8
At3g23810.1 68416.m02993 adenosylhomocysteinase, putative / S-ad... 27 8.8
At2g48160.1 68415.m06031 PWWP domain-containing protein 27 8.8
At2g24400.1 68415.m02915 auxin-responsive protein, putative / sm... 27 8.8
At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative... 27 8.8
>At4g25750.1 68417.m03707 ABC transporter family protein Bactrocera
tryoni membrane transporter (white) gene, PID:g3676298
Length = 577
Score = 30.7 bits (66), Expect = 0.94
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 52 YHGREDLLPAFTEEDEKGPPTQPMS-QYAPAVLQTITNP 165
YHGR DLL AF P+Q S +YA +LQ I +P
Sbjct: 228 YHGRLDLLEAFLLSKGFTVPSQLNSLEYAMEILQNIRDP 266
>At4g01985.1 68417.m00265 expressed protein
Length = 579
Score = 27.9 bits (59), Expect = 6.6
Identities = 23/67 (34%), Positives = 27/67 (40%)
Frame = -3
Query: 333 GLGDGVEVHGDGAVRVQRPHHAGSAFAGLDHVRGGPVGQRDDGVVGVHLDEGDAPVGVGD 154
G G GV V G G + G A G+ GG VG G VG + G G G
Sbjct: 479 GAGGGVGVGGGGGI-------GGGAGGGVGGGVGGGVGGGVRGAVGGAVGGGVGGAGRGS 531
Query: 153 GLQHGGS 133
G GG+
Sbjct: 532 GGASGGA 538
>At1g06520.1 68414.m00691 phospholipid/glycerol acyltransferase
family protein contains Pfam profile PF01553:
Acyltransferase
Length = 585
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 114 CRRSFLVFFSKSWQEILSSVVLVAVDHNLSQSVG 13
CR +L+ FS + E+ +V VAVD +S G
Sbjct: 471 CREPYLLRFSPLFAELTEDIVPVAVDARVSMFYG 504
>At5g42940.1 68418.m05235 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 691
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 106 PPTQ-PMSQYAPAVLQTITNPDGSVSLIQVDPNNPIITLPDGTTAHVIQSGEGGASVVGA 282
PP+Q +S++ PA ++ G ++ +PN+ +++P G+ + G+S+VG
Sbjct: 292 PPSQLNLSRHLPADQHSLDLRPGQSFVVSRNPNSTPVSIPPGSRTMLPPFRWTGSSLVGG 351
Query: 283 LDTDGA 300
A
Sbjct: 352 TSNSTA 357
>At5g16880.2 68418.m01979 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate [Homo
sapiens] GI:2731383; contains Pfam profiles PF00790: VHS
domain, PF03127: GAT domain
Length = 407
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/37 (24%), Positives = 21/37 (56%)
Frame = +1
Query: 64 EDLLPAFTEEDEKGPPTQPMSQYAPAVLQTITNPDGS 174
++L+ ++ +E P+ P++ + PA++ PD S
Sbjct: 301 DELVKTLSKYEEMNKPSAPLTSHEPAMIPVAEEPDDS 337
>At5g16880.1 68418.m01978 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate [Homo
sapiens] GI:2731383; contains Pfam profiles PF00790: VHS
domain, PF03127: GAT domain
Length = 407
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/37 (24%), Positives = 21/37 (56%)
Frame = +1
Query: 64 EDLLPAFTEEDEKGPPTQPMSQYAPAVLQTITNPDGS 174
++L+ ++ +E P+ P++ + PA++ PD S
Sbjct: 301 DELVKTLSKYEEMNKPSAPLTSHEPAMIPVAEEPDDS 337
>At4g13940.1 68417.m02157 adenosylhomocysteinase /
S-adenosyl-L-homocysteine hydrolase / AdoHcyase (SAHH)
identical to SP|O23255 Adenosylhomocysteinase (EC
3.3.1.1) (S-adenosyl-L-homocysteine hydrolase)
(AdoHcyase) {Arabidopsis thaliana}; strong similarity to
SP|P50248 Adenosylhomocysteinase (EC 3.3.1.1) {Nicotiana
sylvestris}
Length = 485
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = -1
Query: 506 SVTCTSGATQTASWWCMEATMDW 438
+V G T WWC E +DW
Sbjct: 105 AVFAWKGETLQEYWWCTERALDW 127
>At3g23810.1 68416.m02993 adenosylhomocysteinase, putative /
S-adenosyl-L-homocysteine hydrolase, putative /
AdoHcyase, putative strong similarity to
SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1)
(S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
{Nicotiana sylvestris}; contains Pfam profile PF00670:
S-adenosyl-L-homocysteine hydrolase, NAD binding domain
Length = 485
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = -1
Query: 506 SVTCTSGATQTASWWCMEATMDW 438
+V G T WWC E +DW
Sbjct: 105 AVFAWKGETLQEYWWCTERALDW 127
>At2g48160.1 68415.m06031 PWWP domain-containing protein
Length = 1366
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +1
Query: 199 NNPIITLPDGTTAHVIQSGEGGASVVGALDTDGAVAVDLNAVAEATLNHEGQII 360
+N + LP +++ EGG+ G D++G D T HE +I+
Sbjct: 1012 SNSTLQLPGFCMPALLKDEEGGSDSEGGCDSEGGSDSDGGDFESVTPEHESRIL 1065
>At2g24400.1 68415.m02915 auxin-responsive protein, putative / small
auxin up RNA (SAUR_D) similar to SAUR-AC-like protein
(small auxin up RNA) (GI:4455308) from [Arabidopsis
thaliana]; auxin-induced protein TGSAUR22 (GI:10185820)
[Tulipa gesnerian]
Length = 178
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 337 LNHEGQIILTADDGHGYPVSVSGVITVPVSASVYQSMVASMHH-HEAVCVAPL 492
L+H+ +L + + +GV+ +P SV++S++ M +E V P+
Sbjct: 87 LSHQAFYVLLREAEEEFGFQQAGVLRIPCEVSVFESILKIMEEKNEGYLVTPI 139
>At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative /
adrenodoxin reductase, putative strong similarity to
Ferredoxin--NADP reductase, chloroplast precursor (EC
1.18.1.2) (FNR) from {Pisum sativum} SP|P10933,
{Mesembryanthemum crystallinum} SP|P41343, {Spinacia
oleracea} SP|P00455, [Capsicum annuum] GI:6899972
Length = 369
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +1
Query: 91 EDEKGPPTQPMSQYAPAVLQTITNPDGSVSLIQVDPNNPIITLPDGT 231
E KG + + AP +T P G L+ DPN +I L GT
Sbjct: 181 ETVKGVCSNFLCDLAPGSDVKLTGPVGKEMLMPKDPNATVIMLATGT 227
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,567,703
Number of Sequences: 28952
Number of extensions: 222520
Number of successful extensions: 798
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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