Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0233
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal...    30   0.27 
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    29   0.62 
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    28   1.1  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    27   1.9  
SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr...    27   2.5  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    26   4.4  
SPAC56F8.13 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   5.8  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    26   5.8  

>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
           catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 369 YVHGGRINTVDLAKELNVDFNHITTHIPEIVK 464
           Y+HG +  T D    ++ DF+H   ++PE +K
Sbjct: 79  YIHGLKFATGDFVIIMDADFSHHPKYLPEFIK 110


>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
 Frame = +3

Query: 129 LLSKQYSTMAPATDWDEIKRLAADFQKAQLSTTAQRLSERNCIEIVTKLIELKLID--VI 302
           +LSK+      A    + KR     ++ +     +RLS RN  ++  +L EL  ++    
Sbjct: 1   MLSKRGLNPVQAESRKKKKREQIKVREERAKRHEERLSHRNMSQMERQLSELTQLESSQA 60

Query: 303 FTNDGKEYLTSLQLIKEMKDELYVHGGRINTVDLAKELNVDFNH 434
                K+ L +LQ    +  +  +HG R+  V+  K    +  H
Sbjct: 61  LNAHDKQLLQNLQRDMAIMKKKNIHGHRVGRVESDKTKEAERQH 104


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/80 (25%), Positives = 35/80 (43%)
 Frame = +3

Query: 246 RNCIEIVTKLIELKLIDVIFTNDGKEYLTSLQLIKEMKDELYVHGGRINTVDLAKELNVD 425
           R  I+ V  +I   L+ V       E L  +Q  + +    ++       VDL ++L V 
Sbjct: 283 REAIQGVLDMIYDALLSVTVQAPDYETLMVIQACRRLYKPAHIQFALPKVVDLNRKLIVG 342

Query: 426 FNHITTHIPEIVKGKDVQLI 485
           +NH   H P +++  D  L+
Sbjct: 343 YNHF-KHDPRVIRLHDKILL 361


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -2

Query: 361 SFISFISWSEVRYSLPSFVKITSINLSSINFVTISIQFR 245
           SF  FI +S +  +LP    I+ ++L S++ +T+SI  R
Sbjct: 140 SFNLFIIFSPIIITLPFIALISFLHLRSLSSLTVSIWLR 178


>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 220

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 345 IKEMKDELYVHGGRINTVDLAKEL 416
           I++  DEL VH G  N +DL K L
Sbjct: 8   IEDSADELSVHSGNDNEIDLEKGL 31


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 267 TKLIELKLIDVIFTNDGKEYL 329
           +KL+ELKL+D I T+D   +L
Sbjct: 783 SKLLELKLVDGIVTDDSDVFL 803


>SPAC56F8.13 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 101

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 423 PHLTLWLNQQCLFGLHAHTTHLSFP 349
           PH T   N   L GL  HT  L+FP
Sbjct: 29  PHNTFLTNILFLLGLIKHTNQLTFP 53


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
 Frame = +3

Query: 174 DEIKRLAADFQKAQL---STTAQRLSERNCIEIVTKLIE---LKLIDVIFTNDGKEYLTS 335
           DE +    DF+   L   S++A    E+NCIE   K +E   L LID+  ++ G  ++T+
Sbjct: 301 DETRYGMGDFEARHLALDSSSAALAVEKNCIEGSLKYLENQFLSLIDLHLSDAG--HITT 358

Query: 336 LQLIKEM 356
           +  ++++
Sbjct: 359 VNSVEKV 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,714,849
Number of Sequences: 5004
Number of extensions: 55592
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)