Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0233
(677 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0133 + 895107-895280,895960-896271,896815-897081,897161-89... 94 8e-20
11_08_0032 - 27807489-27807497,27807641-27807684,27808046-278081... 31 0.85
04_03_0448 - 16020773-16021066,16023040-16023291,16023470-160236... 31 1.1
11_08_0026 + 27752519-27755441,27755538-27755923 30 2.0
11_01_0451 + 3499084-3501757,3501907-3502275,3502358-3502389 28 6.0
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90... 28 6.0
>05_01_0133 +
895107-895280,895960-896271,896815-897081,897161-897265
Length = 285
Score = 94.3 bits (224), Expect = 8e-20
Identities = 57/165 (34%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Frame = +3
Query: 177 EIKRLAADFQKAQLSTTAQRLSERNCIEIVTKLIELKLID--VIFTNDGKEYLTSLQLIK 350
E+ L + AQ + ++ RLSERN +E+V KL E +ID ++ T GKEY+TS L
Sbjct: 4 ELLELQRQLEAAQSARSSVRLSERNVVELVQKLQERGIIDFELLHTTSGKEYITSDHLKH 63
Query: 351 EMKDELYVHGGRINTVDLAKELNVDFNHITTHIPEIV-KGKDVQLISGYLITNYYLEKIA 527
E+K E+ GR + VDL+ L VD H+ ++V + LI+G +++ Y + +
Sbjct: 64 EIKMEIKKR-GRASLVDLSDILGVDLYHVERQSQKVVADDPSLMLINGEIMSQSYWDTVT 122
Query: 528 REVNEKLQLQGYISVGELTLHYDLPADLIQHSVLEKFLGKIIIGK 662
E+NEKLQ + I++ E+ + ++L+ ++LE LG I+ G+
Sbjct: 123 EEINEKLQERSQIALAEIAAQLHIGSELVV-NILEPRLGTIVKGR 166
>11_08_0032 -
27807489-27807497,27807641-27807684,27808046-27808168,
27810770-27810983,27811382-27811530,27811719-27812618,
27812964-27814659
Length = 1044
Score = 31.1 bits (67), Expect = 0.85
Identities = 22/73 (30%), Positives = 35/73 (47%)
Frame = +3
Query: 414 LNVDFNHITTHIPEIVKGKDVQLISGYLITNYYLEKIAREVNEKLQLQGYISVGELTLHY 593
LN++FN ++ IP ++G L S L NY I + L GY+S+G +L
Sbjct: 158 LNLEFNQLSGPIPAELQGLR-SLGSMNLRRNYLSGLIPNSLFNNTPLLGYLSIGNNSLSG 216
Query: 594 DLPADLIQHSVLE 632
+P + VL+
Sbjct: 217 PIPHVIFSLHVLQ 229
>04_03_0448 -
16020773-16021066,16023040-16023291,16023470-16023605,
16023713-16023937,16024467-16024851,16025142-16025421
Length = 523
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/52 (26%), Positives = 31/52 (59%)
Frame = +3
Query: 219 STTAQRLSERNCIEIVTKLIELKLIDVIFTNDGKEYLTSLQLIKEMKDELYV 374
+T R+ R+ + +V +LI + + ++ +DG + T + I+E+ ++LYV
Sbjct: 467 TTNQARIDHRDVLPVVQRLINITMAIPLYYSDGIDGFTFGEGIQEVLEKLYV 518
>11_08_0026 + 27752519-27755441,27755538-27755923
Length = 1102
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +3
Query: 387 INTVDLAKELNVDFNHITTHIPEIVKGK-DVQLISGYLITNYYLEKIAREVNEKLQLQGY 563
I + + L ++FN ++ IP ++G + L+S L NY I + L Y
Sbjct: 146 IGNLTRLRVLYLEFNQLSGSIPAELQGLGSIGLMS--LRRNYLTGSIPNNLFNNTPLLAY 203
Query: 564 ISVGELTLHYDLPADLIQHSVLE 632
++G +L +PA + S+LE
Sbjct: 204 FNIGNNSLSGSIPASIGSLSMLE 226
>11_01_0451 + 3499084-3501757,3501907-3502275,3502358-3502389
Length = 1024
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +3
Query: 273 LIELKLIDVIFTNDGKEYLTSLQLIKEMKDELYVHGGRI----NTVDLAKELNVDFNHIT 440
L+++KL +FT + L ++ ++ + G I ++L ++L++ FNH+T
Sbjct: 537 LVDIKLDQNVFTGNIPITLGNISSLRGLNLSHNNLSGTIPVSLGDLELLQQLDLSFNHLT 596
Query: 441 THIP 452
H+P
Sbjct: 597 GHVP 600
>08_01_0114 -
900530-901191,901269-901338,901536-901640,901721-901831,
901912-902016,902245-902391,903273-903354,903445-903786,
903873-904177,904259-904435,904799-904852,905171-905254,
905855-905968,906048-906321,907552-907926,908003-908267,
908352-908538,908615-909052,909895-909966,910037-910630,
911471-911623,911700-911828,912326-912657,912705-912840,
913046-913491,913580-915087,915169-915431,915622-915738,
915844-916014,916743-916845,916930-916988,918360-918461,
918560-918649,918727-918877,919745-919830,919926-920102,
920915-920978,921859-922008,923132-923211,923311-923376,
924540-924747,925502-925575,925761-925848,926140-926312,
926541-926609,926698-926741,927074-927167,927290-927366,
927475-927552,927992-928085
Length = 3314
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +3
Query: 147 STMAPATDWDEIKRLAADFQKAQLSTTAQRLSERNCIEIVTKLIELKLIDVIFTNDGKE 323
S+ A +D D IK + + +S+ L++ N + + I +KL+D +FT G E
Sbjct: 501 SSFADVSD-DIIKDIYEGTEFHPISSAENHLTKENHYSLFVRKIGMKLVDAMFTGLGVE 558
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,509,007
Number of Sequences: 37544
Number of extensions: 288725
Number of successful extensions: 737
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -