Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0233
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41012| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   8e-08
SB_8397| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-07)                  30   2.0  
SB_39788| Best HMM Match : Ricin_B_lectin (HMM E-Value=6.4e-14)        30   2.0  
SB_31759| Best HMM Match : WD40 (HMM E-Value=0.59)                     29   3.5  
SB_19058| Best HMM Match : WD40 (HMM E-Value=0.59)                     29   3.5  

>SB_41012| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 71

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
 Frame = +3

Query: 414 LNVDFNHITTHIPEIVK-GKDVQLISGYLITNYYLEKIAREVNEKLQLQGYISVGELTLH 590
           +NVD +H+   + EI++  K + LI G LI   YL+++A E+NE LQ  G + + EL+  
Sbjct: 2   INVDLSHVDNKVSEILRHDKSLVLIQGDLIDKDYLDRMAEEINETLQEAGQVFIAELSKT 61

Query: 591 YDLPADLI 614
           + LP D +
Sbjct: 62  FCLPTDFM 69


>SB_8397| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-07)
          Length = 307

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -2

Query: 445 CVVMWLKSTFNSLAKSTVFIRPPCTYNSSFISFISWSEVRYSLPSFVKITSINLSSINFV 266
           CV  WL S   ++ KST        Y +SFI+F+ ++     +P F K     +S    V
Sbjct: 202 CVTNWLDSLAKNVPKSTFSYLSMLLYTNSFINFLVYA---LRMPEFRKEVYKIISKCRHV 258

Query: 265 T 263
           T
Sbjct: 259 T 259


>SB_39788| Best HMM Match : Ricin_B_lectin (HMM E-Value=6.4e-14)
          Length = 784

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 524 CQRSKRKVTASRLHICWGINLAL*FT 601
           C R K++V  +R +IC+ IN A+ FT
Sbjct: 48  CSRMKKRVMLTRPNICFSINCAIEFT 73


>SB_31759| Best HMM Match : WD40 (HMM E-Value=0.59)
          Length = 752

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
 Frame = +3

Query: 189 LAADFQKAQLSTTAQRLSERNCIEIVTKLIELKLIDVIFTNDGKEYLTSLQLIKEMKDEL 368
           L A+F K QL+T          IE V +  E K + V+ +     +   ++    +KD  
Sbjct: 448 LLANFLKTQLNTDEHGKFR---IERVGQYFEDKPLTVLSSFGDNAFAKFVEGSTVLKDSP 504

Query: 369 YV--HGGRINTVDLAKELNVDFNHITTHIPEIV 461
           Y+  H    + + LAK L  + NH   H+ E++
Sbjct: 505 YMVSHSMEHSLLSLAKALVGNVNHTFKHVSEVI 537


>SB_19058| Best HMM Match : WD40 (HMM E-Value=0.59)
          Length = 752

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
 Frame = +3

Query: 189 LAADFQKAQLSTTAQRLSERNCIEIVTKLIELKLIDVIFTNDGKEYLTSLQLIKEMKDEL 368
           L A+F K QL+T          IE V +  E K + V+ +     +   ++    +KD  
Sbjct: 448 LLANFLKTQLNTDEHGKFR---IERVGQYFEDKPLTVLSSFGDNAFAKFVEGSTVLKDSP 504

Query: 369 YV--HGGRINTVDLAKELNVDFNHITTHIPEIV 461
           Y+  H    + + LAK L  + NH   H+ E++
Sbjct: 505 YMVSHSMEHSLLSLAKALVGNVNHTFKHVSEVI 537


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,802,741
Number of Sequences: 59808
Number of extensions: 362173
Number of successful extensions: 804
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)