Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0233
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          26   0.29 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      26   0.29 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.29 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.29 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.0  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.2  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 8/33 (24%), Positives = 22/33 (66%)
 Frame = +3

Query: 444 HIPEIVKGKDVQLISGYLITNYYLEKIAREVNE 542
           H+P+ ++G+    +   L+T Y+LE+++ ++ +
Sbjct: 251 HMPKEIRGQLYYFLHKQLMTRYFLERMSNDLGK 283


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 8/33 (24%), Positives = 22/33 (66%)
 Frame = +3

Query: 444 HIPEIVKGKDVQLISGYLITNYYLEKIAREVNE 542
           H+P+ ++G+    +   L+T Y+LE+++ ++ +
Sbjct: 251 HMPKEIRGQLYYFLHKQLMTRYFLERMSNDLGK 283


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 8/34 (23%), Positives = 21/34 (61%)
 Frame = +1

Query: 7    SKRKIVDTIPYFESIILVRSISIETVIKILVIIL 108
            SKR I  T+P++  + ++  + + TV  ++ +++
Sbjct: 1597 SKRGIASTVPFYADVKVMLPLIVATVALVVAVVI 1630


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 8/34 (23%), Positives = 21/34 (61%)
 Frame = +1

Query: 7    SKRKIVDTIPYFESIILVRSISIETVIKILVIIL 108
            SKR I  T+P++  + ++  + + TV  ++ +++
Sbjct: 1593 SKRGIASTVPFYADVKVMLPLIVATVALVVAVVI 1626


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 516 EKIAREVNEKLQLQGYISVGELTLHYDLP 602
           E    E  E ++L G++S+ +  +HY+LP
Sbjct: 574 EDAMTEALEAVRL-GHMSINQAAIHYNLP 601


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 469 LPFTISGMCVVMWLKSTFNSL-AKSTVFI 386
           L  ++ G C V+W+ ST  SL   S +FI
Sbjct: 68  LIMSLVGNCCVIWIFSTSKSLRTPSNMFI 96


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 469 LPFTISGMCVVMWLKSTFNSL-AKSTVFI 386
           L  ++ G C V+W+ ST  SL   S +FI
Sbjct: 68  LIMSLVGNCCVIWIFSTSKSLRTPSNMFI 96


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 309 NDGKEYLTSLQLI 347
           NDG  YLT +QLI
Sbjct: 363 NDGSLYLTKVQLI 375


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 642  GKIIIGKQDPSE 677
            G +++GKQ PS+
Sbjct: 1222 GSVVLGKQQPSQ 1233


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,797
Number of Sequences: 438
Number of extensions: 3745
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)