Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0233
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17170.1 68415.m01983 protein kinase family protein contains ...    38   0.008
At3g18260.1 68416.m02323 reticulon family protein (RTNLB9) weak ...    31   0.93 
At1g43777.1 68414.m05042 hypothetical protein                          29   2.1  
At1g24706.1 68414.m03104 expressed protein                             29   3.7  
At5g52280.1 68418.m06488 protein transport protein-related low s...    28   4.9  
At3g20180.1 68416.m02558 hypothetical protein                          28   4.9  
At5g60320.1 68418.m07560 lectin protein kinase family protein co...    28   6.5  
At4g03970.1 68417.m00561 Ulp1 protease family protein contains P...    28   6.5  
At1g22260.1 68414.m02782 expressed protein                             28   6.5  

>At2g17170.1 68415.m01983 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; weak similarity to
           Protein kinase APK1A (EC 2.7.1.-) (Swiss-Prot:Q06548)
           [Arabidopsis thaliana]
          Length = 328

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
 Frame = +3

Query: 282 LKLIDVIFTNDGKEYLTSLQLIKEMKDELYVHGGRINTVDLAKELNVDFNHITT------ 443
           L    V+F  DG   L+S  L+KE+       GG + T ++         ++ T      
Sbjct: 177 LSAYTVLFDKDGDACLSSFGLVKEIIRYNRREGGNVRTGNVTYRFGTILVNLLTGLQISP 236

Query: 444 -HIPEIVKGKDV-QLISGYLITNYYLEK---IAREVNEKLQLQGYISVG 575
            H PE++ GKDV +L+   L   +  E+   + +  +E LQ +GYI  G
Sbjct: 237 SHAPEMINGKDVTELMDPNLKGKFSTEEATIVLKLASECLQWKGYIENG 285


>At3g18260.1 68416.m02323 reticulon family protein (RTNLB9) weak
           similarity to RTN2-C [Homo sapiens] GI:3435090; contains
           Pfam profile PF02453: Reticulon
          Length = 225

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +3

Query: 402 LAKELNVDFNHITTHIPEIVKGKDVQLISGYLITNYYLEKIAREVN-EKLQLQGYISVGE 578
           LA+  +V FN I T + ++  G+D  L     I+ Y +  I    N   L   G++S+  
Sbjct: 117 LARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQT 176

Query: 579 LTLHYDLPAD 608
           L + Y++  D
Sbjct: 177 LPVMYEMYED 186


>At1g43777.1 68414.m05042 hypothetical protein
          Length = 241

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +3

Query: 480 LISGYLITNYYLEKIAREVNEKLQ-LQGYISVGELTLHYDLPADLIQHSVLEKFLGKIII 656
           L+ G+L+   Y  KIA++  E  + LQG++S     L +++    IQ   LE+ L    +
Sbjct: 74  LVDGFLLPTSYYPKIAKDHAEIAEDLQGFLSYPWGRLSFEMMLTSIQERELEQ-LATTCV 132

Query: 657 GKQD 668
             QD
Sbjct: 133 AVQD 136


>At1g24706.1 68414.m03104 expressed protein
          Length = 1781

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +3

Query: 393 TVDLAKELNVDFNHITTHIPEIVKGKDVQLISGYL-ITNYYLEKIARE 533
           TVDL   L+++   +T  +PE+   + + L++G+L + ++Y   I  E
Sbjct: 328 TVDLFAALDMESEAVTERLPELENNQTLGLLNGFLSVDDWYHANILFE 375


>At5g52280.1 68418.m06488 protein transport protein-related low
           similarity to  SP|P25386 Intracellular protein transport
           protein USO1 {Saccharomyces cerevisiae}
          Length = 853

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
 Frame = +3

Query: 213 QLSTTAQRLSERNCIEIVTKLIELKLIDVIFTNDGKEYLTSLQLIKEMKDELYVHGGRIN 392
           +L+   + L E N   + +KL + +      +N   EYL S  +I E+K ++ +  G++ 
Sbjct: 456 ELTQEYESLKEENYKNVSSKLEQQEC-----SNAEDEYLDSKDIIDELKSQIEILEGKLK 510

Query: 393 TVDLA-KELNVDFNHITTHIPEIVK 464
              L   E  +  N + + + E+ K
Sbjct: 511 QQSLEYSECLITVNELESQVKELKK 535


>At3g20180.1 68416.m02558 hypothetical protein
          Length = 118

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = +3

Query: 285 KLIDVIFTNDGKEYLTSLQLIKEMKDELYVHGGRINTVDLAKELNVDFNHITTHIPEIVK 464
           K + V    DG   +TS+ +  E +DEL V G  +++  L   L     H+T    E VK
Sbjct: 15  KAMQVAVAADG---VTSVAMEGEFQDELVVVGDGVDSASLIMALRKKACHVTLETLEEVK 71

Query: 465 GKDVQ 479
              V+
Sbjct: 72  KPQVE 76


>At5g60320.1 68418.m07560 lectin protein kinase family protein
           contains Pfam domains, PF00069: Protein kinase domain,
           PF00139: Legume lectins beta domain, and PF00138: Legume
           lectins alpha domain
          Length = 675

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 451 GMCVVMWLKSTFNSLAKSTVFIRPPCTYNSSFIS 350
           G+   + L+S FNS +     I PP ++NS F++
Sbjct: 633 GVSTPVLLESVFNSRSSLAPSISPPSSHNSMFVT 666


>At4g03970.1 68417.m00561 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to  At5g28170, At1g35110,
           At1g44880, At3g42530, At4g19320, At5g36020, At3g43010,
           At2g10350
          Length = 1043

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 442 VVMWLKSTFNSLAKSTVFIRPPCTYNSSFISFISWSEVRYSLPSFVKITSI 290
           ++ +L+  F    K   FI   C +   FI  I W  +R++LP F  +T +
Sbjct: 40  ILSFLRKVFQG-TKELDFILQSC-FGPLFICRIWWIPLRFALPEFACVTGL 88


>At1g22260.1 68414.m02782 expressed protein
          Length = 857

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 165 TDWDEIKRLAADFQKAQLSTTAQRLSERNCIE-IVTKLIELKLID 296
           T  DE+K L +  +K +   T+ +LS  NC E +V+   E+K +D
Sbjct: 243 TKEDEVKDLVSIQEKLEKEKTSVQLSADNCFEKLVSSEQEVKKLD 287


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,419,478
Number of Sequences: 28952
Number of extensions: 262048
Number of successful extensions: 673
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)