Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0232
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma...    85   5e-18
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    29   0.27 
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   3.3  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   5.7  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    24   7.6  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    24   10.0 
SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces...    24   10.0 
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    24   10.0 

>SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 127

 Score = 84.6 bits (200), Expect = 5e-18
 Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
 Frame = +1

Query: 55  MSWQDYVDKQLMASRCVTKAAIAGHDGN-VWAKSEGFEISKDEVAKIVAGFENESLLTSG 231
           MSWQ YVD  L+ +  + +AAI    G+ VWA S GF +S  E+  + AGF++   +   
Sbjct: 1   MSWQAYVDTSLLGTGKIDRAAIVSRAGDSVWAASAGFNLSPQEIQGLAAGFQDPPSMFGT 60

Query: 232 GVTIAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASV 393
           G+ +AG +YI +      I  KL K G+ C+ T+  +++S Y E   P +AA +
Sbjct: 61  GIILAGQKYITIRAEGRSIYGKLQKEGIICVATKLCILVSHYPETTLPGEAAKI 114


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 29.1 bits (62), Expect = 0.27
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = -1

Query: 278 SVPLR*MYRVPAIVTPPLVSSDSFSKPATIFATSSFEISKPSDFAHTLPS*PAMAAFVTH 99
           +VPL   Y    + T   + S   SKP+    +S  + + P +  H++PS  ++A   ++
Sbjct: 487 NVPLYPAYNSSPVQTRTSLFSSRLSKPSNPIVSSVSQANAPKNALHSMPSPTSLANLPSN 546

Query: 98  L 96
           L
Sbjct: 547 L 547


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 137 MCGQSRKASKFQKMKWRR 190
           MC  S++   FQK KW R
Sbjct: 19  MCNYSKRLDTFQKKKWPR 36


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -1

Query: 245 AIVTPPLVSSDSFSKP--ATIFATSSFEISKPSDFAHTLPS*PAM 117
           AIVT   ++S S S P  + +F      I KP    HTL   P +
Sbjct: 548 AIVTLSRIASQSTSDPPPSFVFRDDQLVIDKPGFVYHTLNDIPQL 592


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 311 PTLPSFARMIWSVPL 267
           P +P+F   IWSVP+
Sbjct: 828 PRVPNFRYFIWSVPM 842


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 225  EWRRDDSGHAVHLPQWHRPYHPRE 296
            EW +D      +L   H+ YHP+E
Sbjct: 2532 EWVQDTIPLGEYLDSAHKVYHPKE 2555


>SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 46  LIKMSWQDYVDKQLMASRCVTKAAIAG 126
           ++   W D V  QL A+ C+    +AG
Sbjct: 258 IVSKKWSDVVPFQLPATYCLLMGDVAG 284


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 281 WSVPLR*MYRVPAIVTPPLVSSDSFSKPAT 192
           +S PLR    +P  +  P V SD+FS+ A+
Sbjct: 170 YSFPLRVPINIPPPLCTPSVVSDTFSEFAS 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,702,663
Number of Sequences: 5004
Number of extensions: 32230
Number of successful extensions: 92
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)