Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0232
(398 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 4e-07
SB_22107| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.028
SB_20951| Best HMM Match : Pentaxin (HMM E-Value=9.1e-17) 30 0.60
SB_5805| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_27836| Best HMM Match : DUF92 (HMM E-Value=2.2e-09) 29 1.4
SB_10315| Best HMM Match : Pentaxin (HMM E-Value=5e-12) 29 1.8
SB_23075| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_47897| Best HMM Match : DUF156 (HMM E-Value=2.9) 27 4.3
SB_46305| Best HMM Match : SSDP (HMM E-Value=2) 27 4.3
SB_16217| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_44003| Best HMM Match : DUF658 (HMM E-Value=1.1) 27 7.4
SB_28072| Best HMM Match : VWA (HMM E-Value=0) 27 7.4
SB_1639| Best HMM Match : VWA (HMM E-Value=0) 27 7.4
SB_8004| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
>SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 50.8 bits (116), Expect = 4e-07
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Frame = +1
Query: 103 VTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGTRYIYLSGTDH 282
V +AAI G DG+ WA S GF +S+ E +++ ++ S+ TI G +Y+ L
Sbjct: 7 VQRAAIHGLDGSCWATSSGFSVSQQEAMELLKSLKDGSV---SAKTIGGAKYMMLRNDQE 63
Query: 283 --IIRAKLGKVGVHCM-KTQQAVVISLYEE 363
I KL G C+ T+QA+VI YEE
Sbjct: 64 SKICYLKLKDKGGFCVCLTKQALVIGGYEE 93
>SB_22107| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 383
Score = 34.7 bits (76), Expect = 0.028
Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 12/107 (11%)
Frame = +1
Query: 55 MSWQDYVDKQLMASRCVT------KAAIAGHDGNV-WAKSE---GFEISKDEVAKIVAGF 204
MSW Y+D L ++ T KA I G DG W + ++ +E KI F
Sbjct: 112 MSWDSYIDNLLAQAKDATGNCHADKACIIGLDGGAPWTSAGHACAVKLQPEECTKIANCF 171
Query: 205 ENESLLT--SGGVTIAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQA 339
+N+ + S G+ G +Y +L D + LGK H T QA
Sbjct: 172 KNKDFTSFMSSGIHAEGEKYQFLREEDG--KLVLGKKKDHGAITIQA 216
>SB_20951| Best HMM Match : Pentaxin (HMM E-Value=9.1e-17)
Length = 179
Score = 30.3 bits (65), Expect = 0.60
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Frame = +1
Query: 67 DYVDKQLMASRCVTKAAIAGHDGN------VWAKSEG-FEISKD-EVAKIVAGFENESLL 222
DY D + ++ T+ IA +DG W + G + + KD VAK G +
Sbjct: 37 DYRDVVIYIAQNTTRTGIAVNDGQWHHLCVTWENTAGSWRLYKDGRVAKSGTGLSQGEQI 96
Query: 223 TSGGVTIAGTRYIYLSGTDHIIRAKLGKV 309
GG + G L G H ++ +G++
Sbjct: 97 DGGGAVVLGNEQDMLGGGFHQTQSFIGEM 125
>SB_5805| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 343
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -3
Query: 342 HSLLCLHAMHADLAKLRADDMVCATEVDVPRARYRHAAT 226
HSL C +A LA +R ++CAT P A RH+ T
Sbjct: 71 HSLECTIRCNAPLAVMR-HSLLCATRCHAPLAVMRHSRT 108
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 342 HSLLCLHAMHADLAKLRADDMVCATEVDVPRARYRHA 232
HSLLC +A LA +R ++CA P A RH+
Sbjct: 37 HSLLCATRCYAPLAVMR-HSLLCAIRCYAPLAVMRHS 72
>SB_27836| Best HMM Match : DUF92 (HMM E-Value=2.2e-09)
Length = 355
Score = 29.1 bits (62), Expect = 1.4
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +1
Query: 76 DKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGT 252
D LMA + A+A G+ W+ G I K +++ + T+GGVTI GT
Sbjct: 174 DASLMAMAVL--GALACSCGDTWSSEIGTAI-KSHTPRLITTLRKVPVGTNGGVTIPGT 229
>SB_10315| Best HMM Match : Pentaxin (HMM E-Value=5e-12)
Length = 697
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +1
Query: 127 HDGNVWAKSEGF-EISKDEVAKIV-AGFENESLLTSGGVTIAGTRYIYLSG 273
H G W ++G EI D + ++ GF L +GG + G Y L+G
Sbjct: 380 HYGITWRSNDGHVEIHADGILRLSQTGFATGHTLPAGGTMVLGQSYRVLNG 430
>SB_23075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 354
Score = 27.9 bits (59), Expect = 3.2
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +1
Query: 67 DYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTI 243
D++ +Q+ S C+ A+A G K F + D ++V + ++L TS + I
Sbjct: 249 DFIMRQIETSNCLRILALAERHGLKILKEAAFSVIMDNFTEVVETDDFKNLSTSQVIDI 307
>SB_47897| Best HMM Match : DUF156 (HMM E-Value=2.9)
Length = 430
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 237 DDSGHAVHLPQWHRPYHPREAWQ-GRR 314
DD+ A P W +P H + AW+ G+R
Sbjct: 256 DDTLRARRPPAWRQPVHAKSAWRTGKR 282
>SB_46305| Best HMM Match : SSDP (HMM E-Value=2)
Length = 848
Score = 27.5 bits (58), Expect = 4.3
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -1
Query: 206 SKPATIFATSSFEISKPSD 150
S P IFA SSF I KPSD
Sbjct: 275 SPPLEIFAPSSFFIKKPSD 293
>SB_16217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 27.1 bits (57), Expect = 5.6
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -1
Query: 251 VPAIVTPPLVSSDSFSKPATIFATSSFEISKPSDFAHTLPS*PAMAAFVTH 99
VP +PP+ SS KP + A S EIS + S PA A + H
Sbjct: 199 VPRSGSPPVSSSRPAQKPTSQTALPSTEISGTGSLPKSTKSRPAPAPPLQH 249
>SB_44003| Best HMM Match : DUF658 (HMM E-Value=1.1)
Length = 572
Score = 26.6 bits (56), Expect = 7.4
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +2
Query: 257 TSTSVAQTISSARSLARSACIA*RHSKLWSFLSMKNPSNLS 379
+STS + ++SSA S + S+C + S L SF S + SN S
Sbjct: 203 SSTSTSSSLSSASSSSLSSCSS---SSLSSFSSSSSSSNSS 240
>SB_28072| Best HMM Match : VWA (HMM E-Value=0)
Length = 2979
Score = 26.6 bits (56), Expect = 7.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 95 DAINCLST*SCQLILIKFN*K*NYT 21
DA+N L + + +L +IKF K NYT
Sbjct: 2135 DAVNTLKSVNAKLFVIKFGAKSNYT 2159
>SB_1639| Best HMM Match : VWA (HMM E-Value=0)
Length = 812
Score = 26.6 bits (56), Expect = 7.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 95 DAINCLST*SCQLILIKFN*K*NYT 21
DA+N L + + +L +IKF K NYT
Sbjct: 396 DAVNTLKSVNAKLFVIKFGAKSNYT 420
>SB_8004| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 989
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 43 NLIKMSWQDYVDKQLMASRCVTKAAIAGHDG 135
N I+ +WQ KQ +CV+K +A + G
Sbjct: 959 NYIRYTWQQCAKKQKDVIKCVSKPFLAVYHG 989
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,472,370
Number of Sequences: 59808
Number of extensions: 276565
Number of successful extensions: 775
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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