Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0227
(543 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 184 5e-47
07_01_0578 + 4295386-4296489,4297394-4297507 183 9e-47
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.084
03_05_0366 - 23505755-23506441 31 0.59
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 30 1.0
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 30 1.4
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 30 1.4
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 29 1.8
06_01_0017 + 189346-189561,189614-189905,190024-190043 29 3.2
04_01_0588 + 7657510-7657992,7658397-7658843 29 3.2
02_04_0457 + 23093020-23093343,23093798-23093806 29 3.2
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 28 5.5
05_03_0419 - 13707843-13707860,13707936-13708010,13708251-137082... 28 5.5
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 28 5.5
12_02_0488 + 19587337-19587648,19587739-19587798,19587876-195879... 27 7.3
11_06_0209 + 21282079-21282369,21287029-21287137,21287462-212875... 27 7.3
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 27 7.3
07_01_0354 + 2578676-2578753,2578871-2578951,2579070-2579312 27 7.3
01_01_0878 + 6888459-6889227,6890498-6890523,6891679-6891843,689... 27 7.3
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57... 27 9.7
09_06_0153 - 21243108-21245660 27 9.7
05_06_0214 - 26425100-26425922,26426008-26426058,26426183-264262... 27 9.7
02_03_0152 - 15767985-15768317 27 9.7
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 184 bits (447), Expect = 5e-47
Identities = 91/157 (57%), Positives = 102/157 (64%), Gaps = 1/157 (0%)
Frame = +3
Query: 72 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 248
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 249 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 428
HQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 63 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRL 122
Query: 429 XXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVAD 539
ARGH IE +PE PLVV+D
Sbjct: 123 RRIAVASALAATAVPSLVLARGHRIEGVPEFPLVVSD 159
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 183 bits (445), Expect = 9e-47
Identities = 89/155 (57%), Positives = 105/155 (67%), Gaps = 2/155 (1%)
Frame = +3
Query: 81 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 254
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AGHQ
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 255 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXX 434
TSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 66 TSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRR 125
Query: 435 XXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVAD 539
ARGH IE +PELPLV++D
Sbjct: 126 VAVASALAATSVPSLVLARGHRIETVPELPLVISD 160
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.084
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +3
Query: 261 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 371
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>03_05_0366 - 23505755-23506441
Length = 228
Score = 31.1 bits (67), Expect = 0.59
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 147 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 323
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 324 HRSGQGA 344
+ + + A
Sbjct: 168 NDNDEEA 174
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 30.3 bits (65), Expect = 1.0
Identities = 19/52 (36%), Positives = 22/52 (42%)
Frame = +2
Query: 44 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 199
ASL N + P+F V G SQA V + GAH G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 366 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 259
HH + H + YE+ + H + RQ QY QH
Sbjct: 150 HHQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQH 185
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = -1
Query: 339 PDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 238
P + +HHHGH + Q H G PP
Sbjct: 33 PQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPPPP 66
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -1
Query: 336 DRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 238
D +HHH H G H Q QH PP
Sbjct: 32 DPQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPP 64
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2
Query: 44 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 199
ASL N I +PTF +G + G S + + GAH G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>06_01_0017 + 189346-189561,189614-189905,190024-190043
Length = 175
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -2
Query: 503 NNVSSSLNERWDAGSSNGCRQGR--SPLSEVDATVPTP 396
N+ +S L+ +WDAGS + SPLS V A P
Sbjct: 103 NDSTSKLSFKWDAGSCSSASSSAMYSPLSAVSAPAKAP 140
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +3
Query: 183 NDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV---RGGGTHRSGQGAFGN 353
+D+ ++ SR + + ++S+ W G R+ + GGG R G
Sbjct: 201 HDIQWGDNQPSRSSGVLPSSSEWRSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGL 260
Query: 354 MCRGGRMFAPTKPWRRW 404
P PWRRW
Sbjct: 261 GWASSWFGRPNLPWRRW 277
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +3
Query: 246 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 350
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 387 SWGRTYVHHDTCYRRHPDRTYEYHH 313
SWGR H D RR P R+ +HH
Sbjct: 303 SWGRD--HADNRLRRSPSRSSNFHH 325
>05_03_0419 -
13707843-13707860,13707936-13708010,13708251-13708286,
13709718-13709765,13710246-13710326,13710503-13710554,
13710671-13710730,13711266-13711346,13711461-13711577,
13711714-13711754,13711981-13712059,13712136-13712292,
13712586-13712718,13712799-13712926,13715152-13715314
Length = 422
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -2
Query: 263 STGLVTSLLAHAVGLPRVLGHRNVNIIDQVRTD-GRLEHEREGLG 132
+TG+ +L+ + VG+P+VL ++ I Q+ D G +E +RE G
Sbjct: 204 ATGVYKTLVRYLVGVPQVL----LDFIRQINDDNGPMEEQRERYG 244
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 330 TYEYHH-HGHAEFGRQHVQYPMIQH 259
T+++HH HGH FGR H +P H
Sbjct: 144 THDHHHGHGHHLFGRDH--WPASHH 166
>12_02_0488 +
19587337-19587648,19587739-19587798,19587876-19587941,
19588017-19588082,19588253-19588345
Length = 198
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 156 KAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 269
K ++ D N++ + SK R VSK H SAES
Sbjct: 80 KRKVQMDTENELMTNRSKEVRTKMSVSKACKHSVSAES 117
>11_06_0209 +
21282079-21282369,21287029-21287137,21287462-21287580,
21287722-21287829,21287943-21288062,21288838-21289011,
21289111-21289212
Length = 340
Score = 27.5 bits (58), Expect = 7.3
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +3
Query: 150 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRA---VARIPRVRGGG 320
VF PIR D+V+ V +K + ++ +Q GTGRA R P+ RGG
Sbjct: 160 VFDVPIRKDIVHRVGTHSTKTISEVSGTGRKPYNQK-----GTGRARHGTLRGPQFRGGA 214
Query: 321 T 323
T
Sbjct: 215 T 215
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 27.5 bits (58), Expect = 7.3
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = +3
Query: 240 EAGHQTSAESWGTGRAVAR--IPRVRGGGTHRSGQGAFGNMCR---GGRMFAPTKP-WR 398
E G ++ G++V + + R+R H G G+ G++ + GG+M P P WR
Sbjct: 74 EGGGSDKSKGSEVGKSVLQPDVKRIRTEAAHGGGSGSGGSVSKDGTGGKMLRPGFPKWR 132
>07_01_0354 + 2578676-2578753,2578871-2578951,2579070-2579312
Length = 133
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -2
Query: 302 RNSGDSTSSTP*FSTG--LVTSLLAHAVGLPRVLGHRNVNIIDQV 174
R+SG T F+ L + H +G+ VLG +N+ ++DQ+
Sbjct: 87 RDSGLQTGDPAGFTLADTLACGAVGHIMGVGVVLGLKNIGVLDQI 131
>01_01_0878 +
6888459-6889227,6890498-6890523,6891679-6891843,
6892415-6892494,6893001-6893154,6893808-6893864,
6894103-6894170,6894238-6894344,6894475-6894542,
6894885-6895007
Length = 538
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 380 PHEALAALAPSRQPPTAESGLGGSRCCYR 466
P A A AP+ P A+ G GG C R
Sbjct: 15 PAAAAGAAAPTTPPAAADGGAGGESCSPR 43
>11_01_0072 +
570345-570476,570640-570831,571095-571260,571487-571872
Length = 291
Score = 27.1 bits (57), Expect = 9.7
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 44 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 199
ASL N I +PT +G + G S + + GAH G + C F
Sbjct: 126 ASLDTANNDIPAPTLDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>09_06_0153 - 21243108-21245660
Length = 850
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -3
Query: 130 APCTVSLFSEYTDTKGRATDRLISLL*RSYTSEIYTNSGDK 8
APCTV +F++ +G A+ RL + + S + N GD+
Sbjct: 612 APCTVGVFADRPFWRGGASFRLPTKISTSEETTAARNQGDQ 652
>05_06_0214 -
26425100-26425922,26426008-26426058,26426183-26426256,
26426344-26426441,26426547-26426671,26426724-26426957,
26426992-26427037,26427101-26427152,26427331-26427367,
26427521-26427637,26428287-26428352,26428439-26428518,
26429102-26429311,26429650-26429739,26430093-26430182,
26430280-26430411,26430876-26431094,26431203-26431286,
26431543-26431656,26431857-26431914,26432535-26432602,
26432847-26432962,26433495-26433574,26433839-26433912
Length = 1045
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 135 WLHPAPSHSSLN-TPTLKVGLPIDSF 61
WL P P+H ++N L + +P+D F
Sbjct: 871 WLKPTPAHVAMNPAEALAMQIPVDHF 896
>02_03_0152 - 15767985-15768317
Length = 110
Score = 27.1 bits (57), Expect = 9.7
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Frame = -1
Query: 351 YRRHPDRTYEYHHHGHAEFGRQ----HVQYPMI-QHWFGDQPP 238
YR P HG AEF RQ H +P HW +PP
Sbjct: 19 YRYRPSPMLPELSHGVAEFSRQSTRRHAPWPPSGGHWSSSEPP 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,095,832
Number of Sequences: 37544
Number of extensions: 340917
Number of successful extensions: 1431
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1422
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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