Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0227
(543 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 194 4e-50
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 192 2e-49
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 29 1.5
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp... 29 2.0
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp... 29 2.0
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 29 2.7
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 29 2.7
At4g39480.1 68417.m05585 cytochrome P450 family protein contains... 28 3.5
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 28 4.6
At5g01010.1 68418.m00001 expressed protein 28 4.6
At3g12430.1 68416.m01548 expressed protein ; expression supporte... 28 4.6
At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g... 27 6.1
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 27 6.1
At4g04920.1 68417.m00715 expressed protein 27 8.1
At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to... 27 8.1
At1g76010.1 68414.m08825 expressed protein 27 8.1
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 194 bits (472), Expect = 4e-50
Identities = 93/161 (57%), Positives = 109/161 (67%), Gaps = 2/161 (1%)
Frame = +3
Query: 63 MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 236
M+ + ARPLV++ + + T Q + LP V AP+RPD+VN VH +S NSRQPY VS
Sbjct: 1 MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60
Query: 237 KEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXX 416
K+AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 61 KKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRV 120
Query: 417 XXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVAD 539
ARGH IE +PE+PLVV+D
Sbjct: 121 NVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSD 161
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 192 bits (467), Expect = 2e-49
Identities = 93/158 (58%), Positives = 105/158 (66%), Gaps = 2/158 (1%)
Frame = +3
Query: 72 SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 245
+ ARPLV+V + T Q LP V AP+RPD+VN VH +S NSRQPY VSK+A
Sbjct: 5 AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64
Query: 246 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXX 425
GHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 65 GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVN 124
Query: 426 XXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVAD 539
ARGH IE +PE+PLVV+D
Sbjct: 125 MKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSD 162
>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 497
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +3
Query: 87 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 233
LV +++ SE+++ PLPF K+P +PD++ H + NS+ C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397
>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 844
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -1
Query: 378 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 259
R++ H + +H D + E+HHH H R+H ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775
>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 843
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -1
Query: 378 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 259
R++ H + +H D + E+HHH H R+H ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 362 WWTYVRPHEALAALAPSRQPPTAESGLGGSRCC 460
WW +V LA+ APS P + L SR C
Sbjct: 465 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC 497
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 362 WWTYVRPHEALAALAPSRQPPTAESGLGGSRCC 460
WW +V LA+ APS P + L SR C
Sbjct: 464 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC 496
>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 989
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 138 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 233
P+PF K+P +PD++ H + NSR +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 138 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 233
P+PF K+P +PD++ H + NS+ +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 27.9 bits (59), Expect = 4.6
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -1
Query: 366 HHDTCYRRHPDRTYEYHHHGHAEF 295
HH Y H Y Y +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145
>At5g01010.1 68418.m00001 expressed protein
Length = 409
Score = 27.9 bits (59), Expect = 4.6
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -2
Query: 263 STGLVTSLLAHAVGLPRVLGHRNVNIIDQVR-TDGRLEHEREGLG 132
+TG+ +L+ + VG+P+VL ++ I Q+ DG +E +RE G
Sbjct: 203 ATGVYKTLVKYLVGVPQVL----LDFIRQINDDDGPMEEQRERYG 243
>At3g12430.1 68416.m01548 expressed protein ; expression supported
by MPSS
Length = 238
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 141 GAWLHPAPSHSSLNTPTLKVGLPID--SFRYFSEAIPLKY 28
G W+H SH+ ++ L VG+ + Y+S + P++Y
Sbjct: 38 GQWIHDVLSHNRFSSHPLVVGVGVQWTPSSYYSASSPVRY 77
>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
glycine-rich protein 18 (GRP18) PMID:11431566;
Length = 228
Score = 27.5 bits (58), Expect = 6.1
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = +3
Query: 231 VSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ---GAFGNMCRGGRMFAPTKPW 395
+ + G + +AE + + + ++P G G G+ G FGN GG F W
Sbjct: 81 IRRRMGAKPTAEGTSSAQPLLKLPVYGGYGGFWGGKKFSGTFGNKPGGGNPFGDISKW 138
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 27.5 bits (58), Expect = 6.1
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -1
Query: 366 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 283
HHD + H D +++ HH H H
Sbjct: 311 HHDHDHDHHHDHNHDHDHHHHDGHDHHH 338
>At4g04920.1 68417.m00715 expressed protein
Length = 1250
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +3
Query: 156 KAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAE-SWGTGRAVARIPRVRGG 317
K P D + + +S S S VS EA Q++A +WG+G RGG
Sbjct: 403 KKPSDQDSSDAISLSCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGG 457
>At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to
glycine-rich protein; atGRP (GI:259447) [Arabidopsis
thaliana]
Length = 145
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 273 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 368
G GR R +GGG + G G+ G+ CR G
Sbjct: 88 GGGRYQGGGGRYQGGGGRQGGGGSGGSYCRHG 119
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = +3
Query: 234 SKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG 365
S+ G + G GR R R RGGG R G G F N G
Sbjct: 302 SQGRGGYDGPQGRGRGRGRGRGGRGRGGG--RGGDGGFNNRSDG 343
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,177,743
Number of Sequences: 28952
Number of extensions: 228988
Number of successful extensions: 859
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -