Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0223
(348 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d... 103 6e-24
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 100 6e-23
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo... 42 3e-05
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe... 32 0.029
SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch... 26 1.5
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 25 2.5
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 25 3.4
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 24 5.9
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 24 5.9
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 24 7.8
>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 103 bits (248), Expect = 6e-24
Identities = 44/65 (67%), Positives = 53/65 (81%)
Frame = +1
Query: 106 TVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGV 285
T GK+I C AAVAW+ PLSIE ++V PP+ EVR+KI +GVCHTDAYTLSGKDPEG+
Sbjct: 6 TAGKIINCKAAVAWQPAAPLSIENVQVFPPRVHEVRIKIVNSGVCHTDAYTLSGKDPEGL 65
Query: 286 FPVVL 300
FPV+L
Sbjct: 66 FPVIL 70
>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 100 bits (240), Expect = 6e-23
Identities = 47/67 (70%), Positives = 53/67 (79%)
Frame = +1
Query: 100 MSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPE 279
MS GK I C AAVAW A +PLSIE+I+V PPKA EVRVK+ + VCHTDAYTLSG DPE
Sbjct: 1 MSFEGKTITCKAAVAWGAKEPLSIEDIQVAPPKAHEVRVKVDWSAVCHTDAYTLSGVDPE 60
Query: 280 GVFPVVL 300
G FP+VL
Sbjct: 61 GAFPIVL 67
>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
Adh1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 350
Score = 41.9 bits (94), Expect = 3e-05
Identities = 25/53 (47%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 124 KCLAAVAWEAGKPLSI--EEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDP 276
K LAAV G P ++ EE+ V P EV V I TGVCHTD + L G P
Sbjct: 6 KQLAAVFHTHGGPENVKFEEVPVAEPGQDEVLVNIKYTGVCHTDLHALQGDWP 58
>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 325
Score = 31.9 bits (69), Expect = 0.029
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 163 LSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGVFPVVL 300
+ I+ + + PK GE+ VKI A + +D +G P V+P ++
Sbjct: 23 IEIQSVPIPQPKNGELLVKIEAAAINPSDLMNATGGFPYTVYPRIV 68
>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
Crs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 229
Score = 26.2 bits (55), Expect = 1.5
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +2
Query: 2 LIGF*YFVTS--SSKRFIARL*FQHFVIGSCPVQSCQQ 109
L+ F +V S S + F+ L FQH S P +SC Q
Sbjct: 177 LLNFDIYVISLPSVESFLTPLIFQHVFFKSLPSESCDQ 214
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 25.4 bits (53), Expect = 2.5
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 124 KCLAAVAWEAGKPL-SIEEIEVDPPKAGEVRVKITATG 234
K ++ +AWE KPL + E+I D +GE+ V T +G
Sbjct: 63 KVISCIAWEQ-KPLYASEQITTDISGSGEILVLGTNSG 99
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 25.0 bits (52), Expect = 3.4
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -1
Query: 339 LTDTLHDSAAFMSQYYR--KHSLRIFSGECIRVSMADS 232
L++T+ +++F+S+YYR +L IF R S ++
Sbjct: 441 LSETISSTSSFLSEYYRLSSEALSIFKAYKNRYSFVNT 478
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 24.2 bits (50), Expect = 5.9
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 148 EAGKPLSIEEIEVDPPKAGEVRVK 219
E K L E +DP KA E RVK
Sbjct: 382 EKSKELQDREAYIDPDKAEESRVK 405
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 24.2 bits (50), Expect = 5.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 48 MKRLLDDVTKYQNPI 4
MKRLLD + K +NPI
Sbjct: 125 MKRLLDSLKKAKNPI 139
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 23.8 bits (49), Expect = 7.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 189 VHFNLLDGQRLACFPRDCGQALNHFTD 109
VH LL G R CF R + L++ D
Sbjct: 921 VHLALLVGSRHKCFLRSAIEILSYLVD 947
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,372,071
Number of Sequences: 5004
Number of extensions: 25867
Number of successful extensions: 75
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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