Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0223
(348 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U18781-1|AAB03374.1| 384|Caenorhabditis elegans alcohol dehydro... 103 4e-23
AC006663-4|AAF39899.1| 384|Caenorhabditis elegans Hypothetical ... 103 4e-23
AC006663-3|AAL32231.1| 386|Caenorhabditis elegans Hypothetical ... 98 1e-21
AC025722-1|AAK68507.1| 554|Caenorhabditis elegans Hypothetical ... 50 6e-07
Z81570-3|CAB04603.1| 351|Caenorhabditis elegans Hypothetical pr... 40 4e-04
AF125951-1|AAD14690.3| 326|Caenorhabditis elegans Hypothetical ... 38 0.001
Z81570-2|CAB04604.1| 349|Caenorhabditis elegans Hypothetical pr... 35 0.018
Z78419-6|CAB01704.1| 487|Caenorhabditis elegans Hypothetical pr... 31 0.17
Z83119-4|CAE17866.1| 226|Caenorhabditis elegans Hypothetical pr... 29 0.91
Z70782-4|CAA94842.1| 347|Caenorhabditis elegans Hypothetical pr... 28 2.1
Z92834-3|CAB07384.1| 328|Caenorhabditis elegans Hypothetical pr... 27 2.8
Z70782-3|CAA94841.1| 347|Caenorhabditis elegans Hypothetical pr... 27 2.8
Z68337-10|CAA92753.1| 647|Caenorhabditis elegans Hypothetical p... 27 2.8
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 27 2.8
AL032641-8|CAA21650.1| 647|Caenorhabditis elegans Hypothetical ... 27 2.8
Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical pr... 26 6.4
U80843-9|AAB37969.1| 392|Caenorhabditis elegans Hypothetical pr... 26 8.5
AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore ... 26 8.5
>U18781-1|AAB03374.1| 384|Caenorhabditis elegans alcohol
dehydrogenase protein.
Length = 384
Score = 103 bits (247), Expect = 4e-23
Identities = 49/66 (74%), Positives = 52/66 (78%)
Frame = +1
Query: 103 STVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEG 282
ST G+VI C AAVAW A PLSIE I+V PPKA EVRVKI T VCHTDAYTL G DPEG
Sbjct: 3 STAGQVINCKAAVAWSAKAPLSIETIQVAPPKAHEVRVKILYTAVCHTDAYTLDGHDPEG 62
Query: 283 VFPVVL 300
+FPVVL
Sbjct: 63 LFPVVL 68
>AC006663-4|AAF39899.1| 384|Caenorhabditis elegans Hypothetical
protein H24K24.3a protein.
Length = 384
Score = 103 bits (247), Expect = 4e-23
Identities = 49/66 (74%), Positives = 52/66 (78%)
Frame = +1
Query: 103 STVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEG 282
ST G+VI C AAVAW A PLSIE I+V PPKA EVRVKI T VCHTDAYTL G DPEG
Sbjct: 3 STAGQVINCKAAVAWSAKAPLSIETIQVAPPKAHEVRVKILYTAVCHTDAYTLDGHDPEG 62
Query: 283 VFPVVL 300
+FPVVL
Sbjct: 63 LFPVVL 68
>AC006663-3|AAL32231.1| 386|Caenorhabditis elegans Hypothetical
protein H24K24.3b protein.
Length = 386
Score = 98.3 bits (234), Expect = 1e-21
Identities = 49/68 (72%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Frame = +1
Query: 103 STVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVK--ITATGVCHTDAYTLSGKDP 276
ST G+VI C AAVAW A PLSIE I+V PPKA EVRVK I T VCHTDAYTL G DP
Sbjct: 3 STAGQVINCKAAVAWSAKAPLSIETIQVAPPKAHEVRVKFQILYTAVCHTDAYTLDGHDP 62
Query: 277 EGVFPVVL 300
EG+FPVVL
Sbjct: 63 EGLFPVVL 70
>AC025722-1|AAK68507.1| 554|Caenorhabditis elegans Hypothetical
protein Y50D4C.2 protein.
Length = 554
Score = 49.6 bits (113), Expect = 6e-07
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = +1
Query: 220 ITATGVCHTDAYTLSGKDPEGVFPVVL 300
I T VCHTDAYTL G DPEG+FPVVL
Sbjct: 215 ILYTSVCHTDAYTLDGHDPEGLFPVVL 241
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 122 LSAWPQSRGKQASRCPSRRLKWTRQKPVKCALR 220
+ A P S G Q +R KW +KP K AL+
Sbjct: 181 IPARPPSPGAQKLHSRLKRSKWLHRKPTKFALK 213
>Z81570-3|CAB04603.1| 351|Caenorhabditis elegans Hypothetical
protein K12G11.4 protein.
Length = 351
Score = 40.3 bits (90), Expect = 4e-04
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +1
Query: 154 GKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSG 267
G PL + ++ V P+ E+ VKI +G+CH+D +T G
Sbjct: 19 GGPLEVRQVSVPQPQENELLVKIEYSGICHSDLHTWEG 56
>AF125951-1|AAD14690.3| 326|Caenorhabditis elegans Hypothetical
protein D2063.1 protein.
Length = 326
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +1
Query: 118 VIKCLAAVAWEA-GKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSG 267
V K A+ +E+ G PL I+++ + P E+ VK+ +G+CH+D +T G
Sbjct: 6 VPKTQRALIFESYGGPLEIKQLPIPQPNEDELLVKMEYSGICHSDVHTWLG 56
>Z81570-2|CAB04604.1| 349|Caenorhabditis elegans Hypothetical
protein K12G11.3 protein.
Length = 349
Score = 34.7 bits (76), Expect = 0.018
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 160 PLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSG 267
PL + ++ V P E+ VKI +G+CH+D + G
Sbjct: 20 PLEVRQVPVPSPADDEILVKIEYSGICHSDLHVWLG 55
>Z78419-6|CAB01704.1| 487|Caenorhabditis elegans Hypothetical
protein F26A3.6 protein.
Length = 487
Score = 31.5 bits (68), Expect = 0.17
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 130 LAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAY 255
L A+ + + PL E I DP + +++T T VC DAY
Sbjct: 284 LVAMRYCSCHPLMAELIHYDPSSYRDFLLRVTQTSVCSVDAY 325
>Z83119-4|CAE17866.1| 226|Caenorhabditis elegans Hypothetical
protein R05H10.7 protein.
Length = 226
Score = 29.1 bits (62), Expect = 0.91
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +1
Query: 55 TIISTFCDWQLSSAVMSTVGKVIKCLAAVAWEA-GKPLSIEEIEVDPPKAGEVRVKITAT 231
++++ + S+ V + G+++ CL AW+ + + EVD + I
Sbjct: 49 SLVARCLQFPFSTVVTTQSGEIVACLVNSAWKRDDNAVEGADYEVDEGLTENMTAFIKML 108
Query: 232 GVCHTDAYTLS 264
CH D + L+
Sbjct: 109 NTCHEDFWNLA 119
>Z70782-4|CAA94842.1| 347|Caenorhabditis elegans Hypothetical
protein R04B5.6 protein.
Length = 347
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 163 LSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLS 264
L +E+ + P +V VKI G+C +D + L+
Sbjct: 16 LRLEQAPISKPGPRQVLVKINTVGICGSDVHFLT 49
>Z92834-3|CAB07384.1| 328|Caenorhabditis elegans Hypothetical
protein F39B2.3 protein.
Length = 328
Score = 27.5 bits (58), Expect = 2.8
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 133 AAVAWEAGKPLSIEEIEVDPPK--AGEVRVKITATGVCHTDAYTLSGK 270
AAV G P IE +E D P+ +V V+ A GV D Y +G+
Sbjct: 12 AAVVRRFGAPDVIEAVESDMPRLEKNQVLVRNYAAGVNPVDTYIRAGQ 59
>Z70782-3|CAA94841.1| 347|Caenorhabditis elegans Hypothetical
protein R04B5.5 protein.
Length = 347
Score = 27.5 bits (58), Expect = 2.8
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +1
Query: 163 LSIEEIEVDPPKAGEVRVKITATGVCHTDAY 255
L +E++ + P +V VK+ G+C +D +
Sbjct: 16 LRLEQVPIPKPGPNQVLVKVHTVGICGSDVH 46
>Z68337-10|CAA92753.1| 647|Caenorhabditis elegans Hypothetical
protein M7.5 protein.
Length = 647
Score = 27.5 bits (58), Expect = 2.8
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = +1
Query: 22 CYIIE*ALHSSTIISTFCDWQLSSAVMSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKA 201
C+II +L S+ I W L SA S G AV WE ++ I VD K
Sbjct: 234 CHII--SLRSADSIGIKYTWTLPSAECSADGAQNAVPKAVGWERNANDKLQPISVDLSKE 291
Query: 202 GEVRV 216
+ ++
Sbjct: 292 FDPKI 296
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 27.5 bits (58), Expect = 2.8
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -2
Query: 290 GNTPSGSFPESVYASVWQTPVAVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLP 111
G++ G+ SV +S + T T+P+ STS SS +P+S A + P
Sbjct: 1533 GSSTVGATQTSVSSSTVPNTGSTGSTVTNPSTSSSTSGSSSTQSIPSSTAANTGSSTSGP 1592
Query: 110 TVDMT 96
TV T
Sbjct: 1593 TVATT 1597
>AL032641-8|CAA21650.1| 647|Caenorhabditis elegans Hypothetical
protein M7.5 protein.
Length = 647
Score = 27.5 bits (58), Expect = 2.8
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = +1
Query: 22 CYIIE*ALHSSTIISTFCDWQLSSAVMSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKA 201
C+II +L S+ I W L SA S G AV WE ++ I VD K
Sbjct: 234 CHII--SLRSADSIGIKYTWTLPSAECSADGAQNAVPKAVGWERNANDKLQPISVDLSKE 291
Query: 202 GEVRV 216
+ ++
Sbjct: 292 FDPKI 296
>Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical protein
ZK270.2e protein.
Length = 4541
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -2
Query: 227 AVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLPT 108
A + T T+ G STS ++ DSG +S T + H + LP+
Sbjct: 4218 AYLSTATAVFSGASTSAAAADSGANSSTNTTS-HSLVLPS 4256
>Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical protein
ZK270.2d protein.
Length = 4648
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -2
Query: 227 AVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLPT 108
A + T T+ G STS ++ DSG +S T + H + LP+
Sbjct: 4207 AYLSTATAVFSGASTSAAAADSGANSSTNTTS-HSLVLPS 4245
>Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical protein
ZK270.2a protein.
Length = 4530
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -2
Query: 227 AVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLPT 108
A + T T+ G STS ++ DSG +S T + H + LP+
Sbjct: 4207 AYLSTATAVFSGASTSAAAADSGANSSTNTTS-HSLVLPS 4245
>Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical protein
ZK270.2e protein.
Length = 4541
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -2
Query: 227 AVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLPT 108
A + T T+ G STS ++ DSG +S T + H + LP+
Sbjct: 4218 AYLSTATAVFSGASTSAAAADSGANSSTNTTS-HSLVLPS 4256
>Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical protein
ZK270.2d protein.
Length = 4648
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -2
Query: 227 AVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLPT 108
A + T T+ G STS ++ DSG +S T + H + LP+
Sbjct: 4207 AYLSTATAVFSGASTSAAAADSGANSSTNTTS-HSLVLPS 4245
>Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical protein
ZK270.2a protein.
Length = 4530
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -2
Query: 227 AVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLPT 108
A + T T+ G STS ++ DSG +S T + H + LP+
Sbjct: 4207 AYLSTATAVFSGASTSAAAADSGANSSTNTTS-HSLVLPS 4245
>U80843-9|AAB37969.1| 392|Caenorhabditis elegans Hypothetical
protein C32B5.14 protein.
Length = 392
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 61 ISTFCDWQLSSAVMSTVGKVIKCLAAVAWEAGKPLSIEEIEVD 189
I T+ +QLS AV+ V ++ V EAG P + ++I ++
Sbjct: 324 IGTYHTYQLSEAVVDEVMIFVRTNYGVMIEAGLPQTTDQITLN 366
>AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore
complex protein protein8, isoform b protein.
Length = 1090
Score = 25.8 bits (54), Expect = 8.5
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +2
Query: 185 WTRQKPVKCALRSRPPESAILTRIH 259
W + +C ++SRPP ++ R+H
Sbjct: 363 WEIETVSRCKVKSRPPPRHLVDRVH 387
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,742,304
Number of Sequences: 27780
Number of extensions: 152460
Number of successful extensions: 485
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -