Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0218
(538 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 116 2e-27
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 62 5e-11
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 56 3e-09
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 54 2e-08
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 49 4e-07
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 43 3e-05
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 40 2e-04
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 40 3e-04
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 39 4e-04
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 39 5e-04
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 38 0.001
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 38 0.001
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 36 0.003
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 27 1.3
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 27 2.3
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 25 5.4
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 5.4
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 25 7.2
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 9.5
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 9.5
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 25 9.5
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 116 bits (279), Expect = 2e-27
Identities = 50/102 (49%), Positives = 69/102 (67%)
Frame = +3
Query: 228 NMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEA 407
N+ + DW + +L PF K+FY H V RS EV EYR E+ V G+ V P+ FEEA
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEA 127
Query: 408 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
FP+YV + VK +G++ PTPIQ Q WP+AMSG+++VG++ TG
Sbjct: 128 GFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATG 169
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 62.1 bits (144), Expect = 5e-11
Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Frame = +3
Query: 243 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPD 419
D ++ + F K+FY + SP EV+E R + + + + G++ P+ + +
Sbjct: 368 DHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSA 427
Query: 420 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
+ ++GY++PT IQAQ P SG++++GVA+TG
Sbjct: 428 QTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTG 465
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 56.0 bits (129), Expect = 3e-09
Identities = 21/65 (32%), Positives = 43/65 (66%)
Frame = +3
Query: 339 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 518
+ ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 519 VAQTG 533
+A+TG
Sbjct: 292 IAETG 296
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 53.6 bits (123), Expect = 2e-08
Identities = 23/50 (46%), Positives = 36/50 (72%)
Frame = +3
Query: 384 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
PI F+E + +++G+K YKEPTPIQA WP ++G+++VG+A+TG
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETG 212
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 49.2 bits (112), Expect = 4e-07
Identities = 23/60 (38%), Positives = 34/60 (56%)
Frame = +3
Query: 354 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+ AQTG
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 42.7 bits (96), Expect = 3e-05
Identities = 16/46 (34%), Positives = 31/46 (67%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
F+E D + + + +G+K PTPIQ + P+ ++ ++++G+AQTG
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTG 93
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 40.3 bits (90), Expect = 2e-04
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
F+ N + +G+ +G++ PT IQ + P+A+ GK++VG A TG
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTG 306
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 39.5 bits (88), Expect = 3e-04
Identities = 19/70 (27%), Positives = 39/70 (55%)
Frame = +3
Query: 324 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 503
E E+ R V ++ + I+ F + + +Q+ +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 504 KNLVGVAQTG 533
++++G A+TG
Sbjct: 127 RDVLGAAKTG 136
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 39.1 bits (87), Expect = 4e-04
Identities = 16/56 (28%), Positives = 33/56 (58%)
Frame = +3
Query: 366 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LV A+TG
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTG 61
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 38.7 bits (86), Expect = 5e-04
Identities = 20/68 (29%), Positives = 37/68 (54%)
Frame = +3
Query: 330 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
+E N E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 510 LVGVAQTG 533
++ AQ+G
Sbjct: 61 VIAQAQSG 68
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 37.9 bits (84), Expect = 0.001
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
F+ + + + G+K PTPIQ + P+ + G+++VG+A+TG
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTG 116
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 37.5 bits (83), Expect = 0.001
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
F+ N +++ V G+K+ TP+QA P+ + K+LV A TG
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTG 48
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 36.3 bits (80), Expect = 0.003
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
FE+ + G+ G++ P+PIQ + PIA+SG++++ A+ G
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNG 91
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/56 (23%), Positives = 31/56 (55%)
Frame = +1
Query: 184 DLEDLVGKKNSLEVRTCVAQIGILFHSNLSTKTFMIHILQFSKDHHMKSKSTEIIT 351
+L++++ K N + + +A + FH + F+ HI +F K+++ ++ I+T
Sbjct: 358 ELKEILNKYNGVHTQE-LAGMRRRFHLMTAPPYFIFHIKRFMKNNYFTERNQTIVT 412
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
F + ++ +K + EPT IQ + G+N +G A+TG
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTG 54
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 5.4
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 249 DSVSLQPFNKN----FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQ 392
D V L PF K FYDP P LK + +E+ + + V +H P+Q
Sbjct: 112 DVVEL-PFTKGGYGGFYDPRPGCLKFTTHEINVSYTDTSIPV----IHIPVQ 158
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -2
Query: 447 PLSLHLVAHNQENL--LLQSIE 388
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 268 LSTKTFMIHILQFSKDHHMKSKSTEIIT 351
+STK H+L S D H+ ++ E++T
Sbjct: 340 ISTKALR-HVLNLSYDFHLNKRAGEVLT 366
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 336 YRNNHEVTVSGVEVHNPIQYFE 401
Y N+ + G EVHNP FE
Sbjct: 290 YMNSESQNLLGDEVHNPFSDFE 311
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 24.6 bits (51), Expect = 9.5
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -3
Query: 467 RRRFFVTHCLY--TLLHIIRKICFFKVLNRIMNLNATYSYLVIISV 336
RR T CLY + L +I K C + I+ +NA ++L +SV
Sbjct: 524 RRLNIHTTCLYRDSNLQVIIKSCIINSVKSIILINAGLAHLGKVSV 569
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 440 DNGLQRTDAYSSSRLADSYVWKE 508
DN + R+D +SS + D YV +E
Sbjct: 259 DNSVLRSDDFSSKAVFDKYVERE 281
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,976,933
Number of Sequences: 5004
Number of extensions: 37911
Number of successful extensions: 113
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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