Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0218
(538 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 79 2e-15
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 73 2e-13
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 72 2e-13
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 63 1e-10
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 53 1e-07
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 52 3e-07
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 52 3e-07
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 52 3e-07
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 51 6e-07
AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical ... 50 8e-07
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 42 2e-04
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 42 2e-04
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 42 2e-04
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 42 3e-04
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 42 3e-04
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 40 9e-04
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 38 0.006
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 38 0.006
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 38 0.006
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 37 0.008
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 37 0.008
AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical ... 34 0.056
AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical ... 34 0.056
Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical pr... 33 0.099
U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical pr... 33 0.099
Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical p... 31 0.53
AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical ... 31 0.53
Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein ( C.ele... 30 0.92
U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation fact... 30 0.92
AC006714-20|AAK29723.2| 281|Caenorhabditis elegans Serpentine r... 29 2.1
AC006714-16|AAK29721.3| 281|Caenorhabditis elegans Serpentine r... 29 2.1
EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein. 29 2.8
CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical ... 29 2.8
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 29 2.8
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 29 2.8
Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical pr... 28 3.7
AC024881-8|AAK71411.2| 318|Caenorhabditis elegans Serpentine re... 28 3.7
AF067945-16|AAC17675.1| 341|Caenorhabditis elegans Serpentine r... 28 4.9
Z81103-2|CAB03213.1| 403|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z81103-1|CAB03208.2| 457|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical pr... 27 6.5
AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical ... 27 8.6
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 79.4 bits (187), Expect = 2e-15
Identities = 35/101 (34%), Positives = 63/101 (62%)
Frame = +3
Query: 231 MRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEAN 410
+R DW + +L P K+FY + V +R YE++++ + ++VT+ G V P+ F EA
Sbjct: 77 LRDVDWSAENLTPIEKDFYHENAAVSRREQYEIDQWVSANQVTLEGRGVPRPVFEFNEAP 136
Query: 411 FPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
P + + + +++PT IQ+ WPIAMSG++++ +A+TG
Sbjct: 137 LPGQIHE-LLYGKFQKPTVIQSISWPIAMSGRDIISIAKTG 176
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 72.5 bits (170), Expect = 2e-13
Identities = 31/97 (31%), Positives = 55/97 (56%)
Frame = +3
Query: 243 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 422
D + Q FNKNFY+ H + + +V +N + V G++ P+ F +F
Sbjct: 216 DHSQIQYQKFNKNFYEEHEDIKRLHYMDVIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKL 275
Query: 423 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
+ + ++ Y++PTPIQA P A+SG++++G+A+TG
Sbjct: 276 LMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTG 312
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 72.1 bits (169), Expect = 2e-13
Identities = 30/66 (45%), Positives = 45/66 (68%)
Frame = +3
Query: 336 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 515
+R + +++ G V P++ +EEA FPD V Q VK +GY EPTPIQ Q PI + ++++
Sbjct: 283 FREDFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVI 342
Query: 516 GVAQTG 533
GVA+TG
Sbjct: 343 GVAETG 348
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 62.9 bits (146), Expect = 1e-10
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Frame = +3
Query: 231 MRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEA 407
+ + D V + F KNFY + + + EV+ YR + +TV G++ PI+ + +
Sbjct: 250 LAQTDHSKVYYRKFKKNFYIETEEIRRMTKAEVKAYREELDSITVKGIDCPKPIKTWAQC 309
Query: 408 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
+ +K Y +PT IQAQ P MSG++++G+A+TG
Sbjct: 310 GVNLKMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTG 351
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 53.2 bits (122), Expect = 1e-07
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = +3
Query: 354 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
V +G +V PI F + + +++++ +KT GY PTP+Q P G++L+ AQTG
Sbjct: 154 VEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTG 213
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 52.0 bits (119), Expect = 3e-07
Identities = 25/63 (39%), Positives = 35/63 (55%)
Frame = +3
Query: 345 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVA 524
N V VSG V I++F EA F V + V GY +PTP+Q P ++ ++L+ A
Sbjct: 124 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCA 183
Query: 525 QTG 533
QTG
Sbjct: 184 QTG 186
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 52.0 bits (119), Expect = 3e-07
Identities = 25/63 (39%), Positives = 35/63 (55%)
Frame = +3
Query: 345 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVA 524
N V VSG V I++F EA F V + V GY +PTP+Q P ++ ++L+ A
Sbjct: 108 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCA 167
Query: 525 QTG 533
QTG
Sbjct: 168 QTG 170
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 52.0 bits (119), Expect = 3e-07
Identities = 25/63 (39%), Positives = 35/63 (55%)
Frame = +3
Query: 345 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVA 524
N V VSG V I++F EA F V + V GY +PTP+Q P ++ ++L+ A
Sbjct: 105 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCA 164
Query: 525 QTG 533
QTG
Sbjct: 165 QTG 167
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 50.8 bits (116), Expect = 6e-07
Identities = 30/99 (30%), Positives = 56/99 (56%), Gaps = 8/99 (8%)
Frame = +3
Query: 261 LQPFNKNFYDPHPTVLKRSPYEVEE-YRNNHEVTV------SGVEVHNPIQYFEEANFPD 419
++P ++ Y SP +++E Y N + V S V++ P+ FE+A +
Sbjct: 33 MKPIVRDLYKIPNEQKNLSPEQLQELYTNGGVMKVYPFREESTVKIPPPVNSFEQAFGSN 92
Query: 420 YVQQG-VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
G ++ G+++P+PIQ+Q WP+ +SG++ +GV+QTG
Sbjct: 93 ASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTG 131
>AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical
protein H27M09.1 protein.
Length = 630
Score = 50.4 bits (115), Expect = 8e-07
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +3
Query: 291 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV-KTMGYKEPTP 467
P + ++S + E R ++ G + PI F E FP + + + K G PT
Sbjct: 156 PPGHIRRQSQEDYEIQRKRLGISCEGDHIPPPIGSFLEMKFPKSLLEFMQKQKGIVTPTA 215
Query: 468 IQAQGWPIAMSGKNLVGVAQTG 533
IQ QG P+A+SG++++G+A TG
Sbjct: 216 IQIQGIPVALSGRDMIGIASTG 237
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +3
Query: 384 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
P + F EAN + +Q+ V GY + TPIQ P+ G +++ AQTG
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTG 388
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +3
Query: 384 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
P + F EAN + +Q+ V GY + TPIQ P+ G +++ AQTG
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTG 388
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +3
Query: 384 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
P + F EAN + +Q+ V GY + TPIQ P+ G +++ AQTG
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTG 388
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 41.9 bits (94), Expect = 3e-04
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +3
Query: 384 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
P + F +++ P +++ V+ GY TPIQ P+ GK+++ AQTG
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTG 345
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 41.9 bits (94), Expect = 3e-04
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +3
Query: 384 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
P + F +++ P +++ V+ GY TPIQ P+ GK+++ AQTG
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTG 345
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 40.3 bits (90), Expect = 9e-04
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
FE+ N + + GY +PTPIQ P+A++GK++ A TG
Sbjct: 150 FEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATG 195
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 37.5 bits (83), Expect = 0.006
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
F EAN + +++ V GY + TPIQ P+ G +++ AQTG
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTG 599
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 37.5 bits (83), Expect = 0.006
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
F EAN + +++ V GY + TPIQ P+ G +++ AQTG
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTG 599
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 37.5 bits (83), Expect = 0.006
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
F EAN + +++ V GY + TPIQ P+ G +++ AQTG
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTG 599
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 37.1 bits (82), Expect = 0.008
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +3
Query: 378 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
H +++ V + ++ G+ +PTPIQ + P M GK++V +++TG
Sbjct: 20 HKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTG 71
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 37.1 bits (82), Expect = 0.008
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +3
Query: 378 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
H +++ V + ++ G+ +PTPIQ + P M GK++V +++TG
Sbjct: 20 HKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTG 71
>AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical
protein H20J04.4a protein.
Length = 488
Score = 34.3 bits (75), Expect = 0.056
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
F + ++ Q ++TM K TP+QA P + G +++G A+TG
Sbjct: 91 FSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTG 136
>AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical
protein H20J04.4b protein.
Length = 561
Score = 34.3 bits (75), Expect = 0.056
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
F + ++ Q ++TM K TP+QA P + G +++G A+TG
Sbjct: 91 FSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTG 136
>Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical
protein T26G10.1 protein.
Length = 489
Score = 33.5 bits (73), Expect = 0.099
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
F E + + +G+ +P+ IQ P A+ GK+++G+A+TG
Sbjct: 46 FAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETG 91
>U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical
protein F55F8.2a protein.
Length = 746
Score = 33.5 bits (73), Expect = 0.099
Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +3
Query: 414 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK-NLVGVAQTG 533
P+ V + ++ MG+ EPT IQ+ P A+ + +++G A+TG
Sbjct: 163 PNEVLEAIEQMGFSEPTEIQSAVLPAAVRDRQDVLGAAETG 203
>Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical
protein F08A8.8 protein.
Length = 222
Score = 31.1 bits (67), Expect = 0.53
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +1
Query: 97 VETVVPNLEEATNSAIIRLDLATVAVDLEDLEDLVGKKN 213
+ETV+ LE N +RL+ A VA E LE + GK N
Sbjct: 71 IETVILALEAGMNLEDVRLEFAHVATREEILESVFGKLN 109
>AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical
protein Y23H5B.6 protein.
Length = 732
Score = 31.1 bits (67), Expect = 0.53
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 429 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
+G+K Y +PT IQ +++G ++VG A+TG
Sbjct: 89 EGLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTG 123
>Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein (
C.elegans mRNA for eIF-4A homologue. ).
Length = 402
Score = 30.3 bits (65), Expect = 0.92
Identities = 11/49 (22%), Positives = 29/49 (59%)
Frame = +3
Query: 387 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
++ F++ + + +G+ G+++P+ IQ + +GK+++ AQ+G
Sbjct: 28 VESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSG 76
>U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation factor
protein 1, isoforma protein.
Length = 402
Score = 30.3 bits (65), Expect = 0.92
Identities = 11/49 (22%), Positives = 29/49 (59%)
Frame = +3
Query: 387 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
++ F++ + + +G+ G+++P+ IQ + +GK+++ AQ+G
Sbjct: 28 VESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSG 76
>AC006714-20|AAK29723.2| 281|Caenorhabditis elegans Serpentine
receptor, class z protein9 protein.
Length = 281
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/61 (22%), Positives = 32/61 (52%)
Frame = -3
Query: 509 ILSRHSYRPALSLNRRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVIISVLF 330
++ R +YR N + + + Y + +I + F + + ++NLN T +L I+++F
Sbjct: 26 LVYRKAYRFNSERNTATYPIVNSFYKKVALINALYFIESILIVVNLNVTNEWLNKIAIIF 85
Query: 329 D 327
+
Sbjct: 86 N 86
>AC006714-16|AAK29721.3| 281|Caenorhabditis elegans Serpentine
receptor, class z protein8 protein.
Length = 281
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/61 (22%), Positives = 32/61 (52%)
Frame = -3
Query: 509 ILSRHSYRPALSLNRRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVIISVLF 330
++ R +YR N + + + Y + +I + F + + ++NLN T +L I+++F
Sbjct: 26 LVYRKAYRFNSERNTATYPIVNSFYKKVALINALYFIESILIVVNLNVTNEWLNKIAIIF 85
Query: 329 D 327
+
Sbjct: 86 N 86
>EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein.
Length = 973
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
FE + +K + P+P+QA+ P+ + G++++ A++G
Sbjct: 24 FESLMIGQKTLERLKNSQFDRPSPVQARAIPVGLLGRDMLVQAKSG 69
>CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical
protein T06A10.1 protein.
Length = 973
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
FE + +K + P+P+QA+ P+ + G++++ A++G
Sbjct: 24 FESLMIGQKTLERLKNSQFDRPSPVQARAIPVGLLGRDMLVQAKSG 69
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 414 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
P + +K M PTPIQ + M G ++V A TG
Sbjct: 744 PQDLHDNLKRMKMNRPTPIQRASFFPIMHGNDVVACAHTG 783
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 414 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
P + +K M PTPIQ + M G ++V A TG
Sbjct: 744 PQDLHDNLKRMKMNRPTPIQRASFFPIMHGNDVVACAHTG 783
>Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical
protein T20D3.5b protein.
Length = 312
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 149 RIIAEFVASSKFGTTVSTAIIPV 81
++I +FVA S G T+STA P+
Sbjct: 221 QLIGDFVAGSLLGATISTAFFPL 243
>Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical
protein T20D3.5a protein.
Length = 221
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 149 RIIAEFVASSKFGTTVSTAIIPV 81
++I +FVA S G T+STA P+
Sbjct: 130 QLIGDFVAGSLLGATISTAFFPL 152
>AC024881-8|AAK71411.2| 318|Caenorhabditis elegans Serpentine
receptor, class t protein53 protein.
Length = 318
Score = 28.3 bits (60), Expect = 3.7
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = -3
Query: 500 RHSYRPALSLNRRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVIISVLFDFI 321
R S+RP + +R+ F+ L L+H+ I + +M +L IIS ++
Sbjct: 224 RKSFRPKRTARQRQIFLQAFLLCLIHLSASILYV-----VMQFIEVPKFLTIIS---QYL 275
Query: 320 W*SFENCRMWIIKVF 276
W + C + I +F
Sbjct: 276 WQLAQGCPVIIYLIF 290
>AF067945-16|AAC17675.1| 341|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 12 protein.
Length = 341
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -2
Query: 225 DLQRILFSHQILQILQIYCHRCQIETN-YR-RICCL 124
D +S I QI+ +CH+ +++TN +R RI CL
Sbjct: 268 DASIFFYSFAIPQIMTCFCHKWKVQTNTFRIRIGCL 303
>Z81103-2|CAB03213.1| 403|Caenorhabditis elegans Hypothetical
protein M04G12.1b protein.
Length = 403
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +3
Query: 291 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEAN---FPDYVQQGVKTMG 449
P PTVL SP+ V N +V H + +AN D +QQ ++++G
Sbjct: 144 PQPTVLPTSPFHVPTMNNLEQVL-----THQRLLQMTQANPRAVDDLIQQSLRSLG 194
>Z81103-1|CAB03208.2| 457|Caenorhabditis elegans Hypothetical
protein M04G12.1a protein.
Length = 457
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +3
Query: 291 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEAN---FPDYVQQGVKTMG 449
P PTVL SP+ V N +V H + +AN D +QQ ++++G
Sbjct: 171 PQPTVLPTSPFHVPTMNNLEQVL-----THQRLLQMTQANPRAVDDLIQQSLRSLG 221
>Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical
protein T21C9.6 protein.
Length = 1215
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +3
Query: 246 WDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPI 389
+ + L+ FN+ Y+ PT L + +E+YR + + G+ NP+
Sbjct: 165 YSNALLKSFNE-IYNDKPTALIENLKTIEKYRKGNVLNQMGLRHRNPL 211
>AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical
protein C24H12.4a protein.
Length = 634
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/46 (21%), Positives = 25/46 (54%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
F + + + + + +G+++ +Q +A+ KN++G A+TG
Sbjct: 91 FADFGLDERILKSIGELGWEKANQVQESVISLALENKNIMGRARTG 136
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,743,579
Number of Sequences: 27780
Number of extensions: 206481
Number of successful extensions: 655
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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