Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0218
(538 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 112 1e-25
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 101 2e-22
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 101 2e-22
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 86 1e-17
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 80 1e-15
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 80 1e-15
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 80 1e-15
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 77 8e-15
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 77 1e-14
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 72 2e-13
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 64 6e-11
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 59 2e-09
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 50 7e-07
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 50 1e-06
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 49 2e-06
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 48 5e-06
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 47 7e-06
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 47 7e-06
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 46 2e-05
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 45 3e-05
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 44 5e-05
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 44 5e-05
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 43 1e-04
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 43 1e-04
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 40 8e-04
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 40 0.001
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 39 0.002
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 39 0.002
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 35 0.030
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 35 0.030
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 35 0.040
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 35 0.040
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 35 0.040
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 35 0.040
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 33 0.16
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 32 0.28
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 31 0.49
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 31 0.49
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 30 0.85
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 30 1.1
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 29 1.5
At5g22960.1 68418.m02684 serine carboxypeptidase S10 family prot... 28 4.5
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 28 4.5
At3g58430.1 68416.m06512 meprin and TRAF homology domain-contain... 28 4.5
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 28 4.5
At5g52530.2 68418.m06518 dentin sialophosphoprotein-related cont... 27 6.0
At5g52530.1 68418.m06517 dentin sialophosphoprotein-related cont... 27 6.0
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 27 6.0
At2g25460.1 68415.m03049 expressed protein 27 6.0
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 27 6.0
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 27 6.0
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 27 6.0
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 112 bits (270), Expect = 1e-25
Identities = 50/103 (48%), Positives = 69/103 (66%)
Frame = +3
Query: 225 QNMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEE 404
++ R+ D D L PF KNFY P V + EVEEYR E+TV G ++ P++ F +
Sbjct: 46 ESPRKLDLDG--LTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRD 103
Query: 405 ANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
FPDYV + VK G+ EPTPIQ+QGWP+AM G++L+G+A+TG
Sbjct: 104 VGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETG 146
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 101 bits (243), Expect = 2e-22
Identities = 41/92 (44%), Positives = 64/92 (69%)
Frame = +3
Query: 258 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 437
+L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD + + +
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 438 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
+G+ EPTPIQAQGWP+A+ G++L+G+A+TG
Sbjct: 181 AKLGFTEPTPIQAQGWPMALKGRDLIGIAETG 212
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 101 bits (243), Expect = 2e-22
Identities = 41/92 (44%), Positives = 64/92 (69%)
Frame = +3
Query: 258 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 437
+L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD + + +
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 438 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
+G+ EPTPIQAQGWP+A+ G++L+G+A+TG
Sbjct: 181 AKLGFTEPTPIQAQGWPMALKGRDLIGIAETG 212
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 86.2 bits (204), Expect = 1e-17
Identities = 34/97 (35%), Positives = 58/97 (59%)
Frame = +3
Query: 243 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 422
D S+ +P NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F
Sbjct: 179 DHSSIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQ 238
Query: 423 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
+ +K Y++PT IQ Q PI +SG++++G+A+TG
Sbjct: 239 IMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTG 275
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 79.8 bits (188), Expect = 1e-15
Identities = 36/81 (44%), Positives = 49/81 (60%)
Frame = +3
Query: 291 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 470
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 471 QAQGWPIAMSGKNLVGVAQTG 533
QAQ WPIAM G+++V +A+TG
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTG 205
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 79.8 bits (188), Expect = 1e-15
Identities = 36/81 (44%), Positives = 49/81 (60%)
Frame = +3
Query: 291 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 470
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 471 QAQGWPIAMSGKNLVGVAQTG 533
QAQ WPIAM G+++V +A+TG
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTG 205
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 79.8 bits (188), Expect = 1e-15
Identities = 36/81 (44%), Positives = 49/81 (60%)
Frame = +3
Query: 291 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 470
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 471 QAQGWPIAMSGKNLVGVAQTG 533
QAQ WPIAM G+++V +A+TG
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTG 205
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 77.0 bits (181), Expect = 8e-15
Identities = 35/97 (36%), Positives = 54/97 (55%)
Frame = +3
Query: 243 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 422
D + +PF KNFY + + + V YR E+ V G +V PIQ++ +
Sbjct: 347 DHSKIEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSK 406
Query: 423 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
+ +K + Y++P PIQAQ PI MSG++ +GVA+TG
Sbjct: 407 ILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTG 443
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 76.6 bits (180), Expect = 1e-14
Identities = 34/97 (35%), Positives = 54/97 (55%)
Frame = +3
Query: 243 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 422
D + +PF KNFY + + + EV YR E+ V G +V PI+++ +
Sbjct: 480 DHSKIEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSK 539
Query: 423 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
+ +K + Y++P PIQ Q PI MSG++ +GVA+TG
Sbjct: 540 ILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTG 576
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 72.1 bits (169), Expect = 2e-13
Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Frame = +3
Query: 273 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 440
NK+ PH P V SP E+ YR HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 441 TMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
+ G+ PTPIQAQ WPIA+ +++V +A+TG
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTG 482
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 64.1 bits (149), Expect = 6e-11
Identities = 29/84 (34%), Positives = 50/84 (59%)
Frame = +3
Query: 282 FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 461
++ P V K S +++ R +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 462 TPIQAQGWPIAMSGKNLVGVAQTG 533
TPIQ QG P+ +SG++++G+A TG
Sbjct: 121 TPIQVQGLPVVLSGRDMIGIAFTG 144
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/83 (32%), Positives = 48/83 (57%)
Frame = +3
Query: 285 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 464
+ P + K S + + R + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 465 PIQAQGWPIAMSGKNLVGVAQTG 533
PIQ QG P+ ++G++++G+A TG
Sbjct: 171 PIQVQGLPVILAGRDMIGIAFTG 193
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 50.4 bits (115), Expect = 7e-07
Identities = 18/66 (27%), Positives = 40/66 (60%)
Frame = +3
Query: 336 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 515
+R + ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 516 GVAQTG 533
G+A+TG
Sbjct: 355 GIAETG 360
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Frame = +3
Query: 324 EVEEYRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 497
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 498 SGKNLVGVAQTG 533
G++L+G+A+TG
Sbjct: 150 DGRDLIGIAKTG 161
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 49.2 bits (112), Expect = 2e-06
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Frame = +3
Query: 228 NMRRPDWD--SVSLQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVEVHNPIQYF 398
N R WD + PF + +P P ++ + + + + SG V P+ F
Sbjct: 102 NNRSGGWDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTF 161
Query: 399 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
E + + + ++ Y +PTP+Q PI + G++L+ AQTG
Sbjct: 162 AEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTG 206
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 47.6 bits (108), Expect = 5e-06
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = +3
Query: 339 RNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 506
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 507 NLVGVAQTG 533
A TG
Sbjct: 180 ECFACAPTG 188
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 47.2 bits (107), Expect = 7e-06
Identities = 25/59 (42%), Positives = 35/59 (59%)
Frame = +3
Query: 357 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L A TG
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITG 214
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 47.2 bits (107), Expect = 7e-06
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 3/105 (2%)
Frame = +3
Query: 228 NMRRPDWD--SVSLQPF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYF 398
N R WD PF N DP + + E Y + + SG V P+ F
Sbjct: 90 NARSGGWDRRDTETNPFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTF 148
Query: 399 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
E + + + ++ Y +PTP+Q PI +G++L+ AQTG
Sbjct: 149 AEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTG 193
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 45.6 bits (103), Expect = 2e-05
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +3
Query: 315 SPYEVEEYRNNHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 488
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 489 IAMSGKNLVGVAQTG 533
A++GK+L+ A TG
Sbjct: 143 AALTGKSLLASADTG 157
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 45.2 bits (102), Expect = 3e-05
Identities = 17/33 (51%), Positives = 25/33 (75%)
Frame = +3
Query: 435 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
V + G+ P+PIQAQ WPIAM +++V +A+TG
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTG 276
Score = 31.1 bits (67), Expect = 0.49
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 330 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 419
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 44.4 bits (100), Expect = 5e-05
Identities = 18/54 (33%), Positives = 34/54 (62%)
Frame = +3
Query: 372 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++G+AQTG
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTG 56
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 44.4 bits (100), Expect = 5e-05
Identities = 20/46 (43%), Positives = 28/46 (60%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
FE N V +K GYK PTPIQ + P+ +SG ++V +A+TG
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTG 75
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 42.7 bits (96), Expect = 1e-04
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Frame = +3
Query: 228 NMRRPDWD--SVSLQPFNKNF-YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYF 398
N R WD + PF + +P T + + + Y + V SG +V P+ F
Sbjct: 95 NNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVNTF 153
Query: 399 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
+ + D + ++ Y PTP+Q PI ++ ++L+ AQTG
Sbjct: 154 ADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 42.7 bits (96), Expect = 1e-04
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Frame = +3
Query: 228 NMRRPDWD--SVSLQPFNKNF-YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYF 398
N R WD + PF + +P T + + + Y + V SG +V P+ F
Sbjct: 95 NNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVNTF 153
Query: 399 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
+ + D + ++ Y PTP+Q PI ++ ++L+ AQTG
Sbjct: 154 ADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 40.3 bits (90), Expect = 8e-04
Identities = 24/90 (26%), Positives = 41/90 (45%)
Frame = +3
Query: 264 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 443
+P K T K EVE+ ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 444 MGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
MG+ T IQA+ P M G++++G A+TG
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLGAARTG 201
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/70 (34%), Positives = 35/70 (50%)
Frame = +3
Query: 324 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 503
EVEE RN+ E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 504 KNLVGVAQTG 533
K++V A+TG
Sbjct: 84 KDVVARAKTG 93
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 39.1 bits (87), Expect = 0.002
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
FE ++ + K +G ++PTP+Q P ++G++++G+AQTG
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTG 105
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/50 (34%), Positives = 30/50 (60%)
Frame = +3
Query: 384 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
PI+ F++ D V +GV GYK+P+ IQ + + G++++ AQ+G
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSG 69
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 35.1 bits (77), Expect = 0.030
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
FE+ + G+ G++ P+PIQ + PIA++G++++ A+ G
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNG 178
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 35.1 bits (77), Expect = 0.030
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
FE+ + G+ G++ P+PIQ + PIA++G++++ A+ G
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNG 178
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 34.7 bits (76), Expect = 0.040
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +3
Query: 387 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
++ F + D ++G+K Y + T +Q+ P A+ G++++G A+TG
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTG 118
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 34.7 bits (76), Expect = 0.040
Identities = 14/46 (30%), Positives = 29/46 (63%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNG 171
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 34.7 bits (76), Expect = 0.040
Identities = 14/46 (30%), Positives = 29/46 (63%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNG 171
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 34.7 bits (76), Expect = 0.040
Identities = 14/46 (30%), Positives = 29/46 (63%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNG 201
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 32.7 bits (71), Expect = 0.16
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +3
Query: 444 MGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
MG++ PT +QAQ P+ +SG++++ A TG
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTG 77
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 31.9 bits (69), Expect = 0.28
Identities = 16/69 (23%), Positives = 34/69 (49%)
Frame = +3
Query: 327 VEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 506
+E+ + + + G + + F+ + + +K MG++ T IQA + GK
Sbjct: 69 MEDGEDEKNIVIVGKGIMTNVT-FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGK 127
Query: 507 NLVGVAQTG 533
+++G A+TG
Sbjct: 128 DVLGAARTG 136
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 31.1 bits (67), Expect = 0.49
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +3
Query: 360 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
V VEV NP + +++ +K G + PIQA + + + G +LVG A+TG
Sbjct: 87 VEDVEVDNP-NAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTG 143
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 31.1 bits (67), Expect = 0.49
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
FEE PD + ++ G+ PT +Q+ P + G + V + TG
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTG 157
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 30.3 bits (65), Expect = 0.85
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
F++ +G++ G+K T +Q P+ + GK+++ A+TG
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTG 127
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 423 VQQGVKTMGYKEPTPIQAQGWPIAM-SGKNLVGVAQTG 533
+ + + + +KEPT IQ + +A GK+++G A+TG
Sbjct: 201 LMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETG 238
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 429 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
+ +K GY+ T +Q PI + GK+++ A+TG
Sbjct: 67 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTG 101
>At5g22960.1 68418.m02684 serine carboxypeptidase S10 family protein
similar to serine carboxypeptidase III [Precursor]
(SP:P37891) [Oryza sativa]
Length = 190
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = +3
Query: 237 RPDWDSVS--LQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHN 383
R D DSVS L F + F+ HP + K Y E H + VHN
Sbjct: 111 RHDEDSVSNDLYDFLQAFFKEHPNLAKDDFYITGESYAGHYIPALASRVHN 161
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 429 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
+ +K G++ T +Q PI + GK+++ A+TG
Sbjct: 395 KAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTG 429
>At3g58430.1 68416.m06512 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains weak hit to Pfam PF00917: MATH
domain
Length = 552
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 70 SCLVTGIIAVETVVPNLEEATNSAIIRLDLATVAV 174
SC++ + +ET+ +LEE +N ++ D+A V
Sbjct: 382 SCMIFLLSLIETLCQSLEELSNEDLVEADIALTYV 416
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 417 DYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 533
D V ++ G+ P+ QA P +SGK+++ A+TG
Sbjct: 89 DNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETG 127
>At5g52530.2 68418.m06518 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.5 bits (58), Expect = 6.0
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +3
Query: 228 NMRRPDWDSVSLQPF--NKNFYDPHPTVLKRSPYEVEEYRNNH--EVTVSGVEVHNPIQY 395
+MRRP+ D+ +L+PF N+ F +P + + +E+ + R E T G +V ++
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 396 FEE 404
EE
Sbjct: 811 NEE 813
>At5g52530.1 68418.m06517 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.5 bits (58), Expect = 6.0
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +3
Query: 228 NMRRPDWDSVSLQPF--NKNFYDPHPTVLKRSPYEVEEYRNNH--EVTVSGVEVHNPIQY 395
+MRRP+ D+ +L+PF N+ F +P + + +E+ + R E T G +V ++
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 396 FEE 404
EE
Sbjct: 811 NEE 813
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 178 LEDLEDLVGKKNSLEVRTCVAQIGILFHSNLSTKTFMIH 294
+ D++ +GK V C A++G+ F S +T M H
Sbjct: 530 VSDIKTWMGKFKDKNVAKCAARMGLCFSSTYATVDVMPH 568
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 27.5 bits (58), Expect = 6.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 153 ETNYRRICCLLQIWNHRFHGYY 88
E + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 285 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 461
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 462 TPIQAQGWPIAMS 500
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 285 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 461
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 462 TPIQAQGWPIAMS 500
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 285 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 461
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 462 TPIQAQGWPIAMS 500
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,101,866
Number of Sequences: 28952
Number of extensions: 187206
Number of successful extensions: 623
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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