Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0215
         (445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    26   2.3  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    25   5.2  
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    25   5.2  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    25   6.9  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      24   9.1  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    24   9.1  

>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 86  IFEKI-IQLKTQRSSIGFNISGSILFRLINFIPFKLLTNFK*IDFII 223
           + EK+ +   ++   +G+  S S    L   IP  LL+NF  IDF +
Sbjct: 841 VSEKLEVAALSEMKKLGYIESSSEFGMLAGLIPLVLLSNFPLIDFFL 887


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 340 TLVLIIPIGFCSFSLVVVIYVKTILYKFILEN*IIIKAK-YNE 215
           TL+L  PI  C    + +IY     Y F   N + +K K YNE
Sbjct: 325 TLLLTEPILVCISGYIALIYALLYGYFFAYPN-VFVKGKGYNE 366


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +1

Query: 319 WVLLTQGSVCHFKIIFGCNGG*TLYYI 399
           WVLL     C F I FGC  G  L +I
Sbjct: 204 WVLLVVLYECAFGIFFGCVIGYLLSFI 230


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 96  KLYNSRRNVHRLDLTSRVQYYFVSSISFR 182
           K+   +RN  RL +T R  YY + + SF+
Sbjct: 467 KVVQEKRNKDRLIVTFRFWYYLMKAKSFQ 495


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = -2

Query: 243 ELLSRLNIMKSIYLKLVKSLNGMKLMRRNSIEPEMLNPIDERCVLSCIIFSKIK*LIVHY 64
           E +   + +K   LK  K L   KL+  N     ++  I  +CV+    F K++  +  Y
Sbjct: 759 ESIGLTSFVKDNKLKASKELQ--KLIEENVFPKNLILFIFRKCVIGIKSFEKLQSYVFTY 816

Query: 63  Y 61
           Y
Sbjct: 817 Y 817


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 159 NSIEPEMLNPIDERCVLSCIIFSKIK 82
           NSI P +   +D +  ++C++FS  K
Sbjct: 328 NSISPAIYGNVDIKKAIACLLFSGSK 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,709,060
Number of Sequences: 5004
Number of extensions: 32224
Number of successful extensions: 66
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)