Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0215
         (445 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0319 - 2499470-2499598,2499681-2499746,2499830-2499937,250...    29   1.7  
05_01_0243 - 1806770-1806832,1806942-1807061,1807275-1807457,180...    28   2.9  
02_05_0936 - 32875479-32875573,32875794-32876028,32877752-328778...    27   5.1  

>03_01_0319 -
           2499470-2499598,2499681-2499746,2499830-2499937,
           2500125-2500259,2500763-2500840,2500994-2501044,
           2501805-2501879,2501975-2502037,2503048-2503137,
           2503215-2503406,2503498-2503591,2503776-2504279,
           2504415-2504614,2504712-2504756,2505023-2505082,
           2505476-2505520,2505858-2505941,2506121-2506318,
           2506960-2507667
          Length = 974

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 12/25 (48%), Positives = 20/25 (80%)
 Frame = +3

Query: 6   VVKVFVVALNQKKSVVICNNSGLLT 80
           V+++F  AL +K+ VVIC+N G+L+
Sbjct: 741 VLELFAAALLEKQIVVICSNLGVLS 765


>05_01_0243 -
           1806770-1806832,1806942-1807061,1807275-1807457,
           1807554-1807693,1807768-1808010,1808664-1808781,
           1808902-1808977,1809054-1809120,1809201-1809288,
           1809381-1809491,1809632-1809799,1809946-1810040,
           1810123-1810162,1810242-1810318,1810607-1810655,
           1810756-1810812,1810959-1811048,1811160-1811223,
           1812085-1812245
          Length = 669

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 443 KKDNRKIYNPIFSTXM**SVYPPLQPNIILKW 348
           +KD R    P+F + +    +PPL+P++   W
Sbjct: 19  RKDGRPAVGPVFRSALSKDGFPPLEPDMKTSW 50


>02_05_0936 -
           32875479-32875573,32875794-32876028,32877752-32877848,
           32878863-32878927,32879506-32879571,32879735-32879842,
           32880169-32880303,32880582-32880647,32881172-32881222,
           32881312-32881386,32881834-32881896,32882694-32882783,
           32882903-32883100,32883189-32883315,32883482-32884100,
           32884228-32884265,32884651-32884718,32885056-32885100,
           32885243-32885302,32885510-32885593,32885677-32885868,
           32887361-32887663
          Length = 959

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +3

Query: 6   VVKVFVVALNQKKSVVICNNSGLLT 80
           V+ +F  AL +K+ +++C+N G+L+
Sbjct: 609 VMTLFAAALLEKQIIIVCSNLGMLS 633


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,274,045
Number of Sequences: 37544
Number of extensions: 152323
Number of successful extensions: 227
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)