Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0215
         (445 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81486-8|CAB03990.2|  338|Caenorhabditis elegans Hypothetical pr...    29   1.5  
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t...    27   4.6  
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t...    27   4.6  
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel...    27   4.6  
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel...    27   4.6  
U53154-1|AAC25854.1|  382|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z68301-8|CAA92626.2|  484|Caenorhabditis elegans Hypothetical pr...    27   8.1  
M98552-5|AAA28207.1|  401|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z81486-8|CAB03990.2|  338|Caenorhabditis elegans Hypothetical
           protein C53A5.10 protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 418 ILFLVRRCSKASIHHYNRI*F*NGRQTLVLIIPIGFCSFSLV 293
           ++ ++ R    S +    I F   R  L+LIIP G+ S+ L+
Sbjct: 129 MILVINRLLDLSFNRIKNILFDGNRTFLILIIPFGYASYFLI 170


>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1797

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 319  IGFCSFSLVVVIYVKTILYKFILEN 245
            I FCSF L++   V+ +L   I+EN
Sbjct: 1431 IYFCSFYLIITYIVRNLLVAVIMEN 1455


>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1831

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 319  IGFCSFSLVVVIYVKTILYKFILEN 245
            I FCSF L++   V+ +L   I+EN
Sbjct: 1465 IYFCSFYLIITYIVRNLLVAVIMEN 1489


>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            c protein.
          Length = 1913

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 319  IGFCSFSLVVVIYVKTILYKFILEN 245
            I FCSF L++   V+ +L   I+EN
Sbjct: 1576 IYFCSFYLIITYIVRNLLVAVIMEN 1600


>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            d protein.
          Length = 1861

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 319  IGFCSFSLVVVIYVKTILYKFILEN 245
            I FCSF L++   V+ +L   I+EN
Sbjct: 1495 IYFCSFYLIITYIVRNLLVAVIMEN 1519


>U53154-1|AAC25854.1|  382|Caenorhabditis elegans Hypothetical
           protein C33G8.7 protein.
          Length = 382

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
 Frame = +3

Query: 45  SVVICNNSGLLT-I*FLRKLYNSRRNVHRLDLTSRVQYYFVSSISFRLNF*LISNKSTSL 221
           S+ + NN  + T +   R L   R+ VH+     +V +Y  SSI+  ++  ++ N     
Sbjct: 130 SIPLRNNDRIFTALENYRWLTKERKIVHKTSPAKKVNFYEYSSIAI-IDSRIVWNLLERT 188

Query: 222 YLAL-IIIQFSKINLYS 269
           +L L ++    K NL+S
Sbjct: 189 FLELKVLDDIDKFNLFS 205


>Z68301-8|CAA92626.2|  484|Caenorhabditis elegans Hypothetical
           protein W01B6.3 protein.
          Length = 484

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 153 YYFVSSISFRLNF*LISNKSTSLYLALI 236
           Y F+SSI   L F LIS+ S+SL   +I
Sbjct: 373 YLFISSIVIGLGFPLISSTSSSLLSQII 400


>M98552-5|AAA28207.1|  401|Caenorhabditis elegans Hypothetical
           protein ZK370.5 protein.
          Length = 401

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 9   VKVFVVALNQKKSVVICNNSGLLTI*FLRKLYN 107
           +KV+VV   +  S+ IC+  G ++   L +LYN
Sbjct: 269 IKVYVVKGQEDLSIKICDRGGGVSRTILERLYN 301


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,079,976
Number of Sequences: 27780
Number of extensions: 167628
Number of successful extensions: 290
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)