Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0214
         (420 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0224 - 8033098-8034552                                           31   0.38 
04_04_0596 - 26497863-26497913,26498010-26498081,26499015-264990...    30   0.66 
07_03_1339 + 25879246-25881154,25881502-25881696,25881777-258819...    28   2.7  
01_05_0050 + 17579872-17580103,17580206-17580262,17581178-175814...    28   2.7  
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157...    27   6.1  
08_02_1065 - 24044466-24045276,24045380-24045509,24045833-24045965     27   8.1  
04_03_0779 - 19507771-19507992,19508678-19508990,19509235-195092...    27   8.1  

>02_02_0224 - 8033098-8034552
          Length = 484

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +2

Query: 155 RLGDNGSTHALYLETIVEETSDDLRSEKSSGGTWLSDSDADSVIHVPANAGSECDSESER 334
           R G+NG+   +YL         D  +++S+   WL    A SV++V   +G     E  R
Sbjct: 235 RDGENGAFPPVYLVGPFVRPRSDEDADESACLEWLDRQPAGSVVYVSFGSGGALSVEQTR 294

Query: 335 EWA 343
           E A
Sbjct: 295 ELA 297


>04_04_0596 -
           26497863-26497913,26498010-26498081,26499015-26499093,
           26499440-26499553,26499822-26499871,26500353-26500398,
           26501100-26501719
          Length = 343

 Score = 30.3 bits (65), Expect = 0.66
 Identities = 17/44 (38%), Positives = 29/44 (65%)
 Frame = +2

Query: 239 SSGGTWLSDSDADSVIHVPANAGSECDSESEREWACPAKRRRRE 370
           SSG +  S+S+++S  +   +AGSE +++SE E     +RRRR+
Sbjct: 99  SSGSSSESESESESS-YSDCSAGSESETDSEEERRRRRRRRRRK 141


>07_03_1339 +
           25879246-25881154,25881502-25881696,25881777-25881928,
           25882147-25882607,25883723-25883810,25884066-25884135,
           25884288-25884361,25884456-25884524,25884647-25884724,
           25884946-25885070,25885168-25885240,25885508-25885566,
           25885650-25886027,25886134-25886236,25886332-25886544
          Length = 1348

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 218 DDLRSEKSSGGTWLSDSDADSVIHVPANAGSECDSESEREWACPAKR 358
           DD++ E+++    LS SDA  V+H PA   S   S+S      P +R
Sbjct: 656 DDVKPEQATSK--LSGSDASKVVHPPARRRSFGRSDSTARGNSPKER 700


>01_05_0050 +
           17579872-17580103,17580206-17580262,17581178-17581413,
           17581509-17581637,17581752-17581811,17582088-17582158,
           17582568-17582673,17582753-17582791
          Length = 309

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 164 DNGSTHALYLETIVEETSDDLRSEKSSGGTWLSDSDADSVIHV 292
           D+G      LE +VE+ S   +SE SSG   + +  ADS  H+
Sbjct: 61  DSGEEQEEELEPVVEQESSGYQSEYSSGND-VDEPSADSDEHI 102


>02_05_0366 -
           28313190-28313601,28313759-28314225,28315044-28315782,
           28316548-28316615,28316693-28316757,28316922-28320162,
           28320239-28320301,28320756-28320824,28321020-28321055,
           28322035-28322280,28322531-28322569,28322695-28322816,
           28322921-28323004,28323100-28323235,28323486-28323535,
           28323620-28323756,28323863-28323951,28324847-28324954,
           28325080-28325163,28325841-28325888,28326036-28326153,
           28328262-28328347
          Length = 2168

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 185 LYLETIVEETSDDLRSEKSSGGTWLSDSDADSVIHVPANAGSECDSESE 331
           LY +  V+  S   R     G    SDSD+  +I  P N  + C+ ES+
Sbjct: 280 LYTKNKVQAFSVS-RESSPDGRDVFSDSDSKDLIKDPLNQANGCNDESD 327


>08_02_1065 - 24044466-24045276,24045380-24045509,24045833-24045965
          Length = 357

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 188 YLETIVEETSDDLRSEKSSGGTW--LSDSDADSVIHVPANAGSECDS 322
           YL+ +++  +  + S  S GG    +S  DAD+ +   A A + C S
Sbjct: 191 YLQCLLQSAASTIASAGSGGGGGGAMSAHDADAALAAAAAAAATCSS 237


>04_03_0779 -
           19507771-19507992,19508678-19508990,19509235-19509296,
           19509845-19509904,19510260-19510367,19510452-19510561,
           19510656-19510701,19510812-19510884,19510970-19511100,
           19511270-19511356,19511871-19511968,19512849-19512971,
           19513091-19513286
          Length = 542

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 260 SDSDADSVIHVPANAGSECDSESEREWACPAKRR 361
           SDSD++     PANAG    +    EW   + +R
Sbjct: 51  SDSDSNPASSAPANAGGAAAAAEAPEWKKVSAKR 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,919,483
Number of Sequences: 37544
Number of extensions: 219437
Number of successful extensions: 655
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)