Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0214
         (420 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45985| Best HMM Match : IQ (HMM E-Value=1.7e-37)                    29   2.1  
SB_12387| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_34750| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)                   27   6.3  
SB_8888| Best HMM Match : Fer4 (HMM E-Value=3.9)                       27   6.3  
SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013)                    27   8.3  

>SB_45985| Best HMM Match : IQ (HMM E-Value=1.7e-37)
          Length = 942

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +2

Query: 194 ETIVEETSDDLRSEKSSGGTWLSDSDADSVIHVPANAGSECDSES 328
           +T  +E+ DD +SEKSS  T  S+  +DS     +++G + D ES
Sbjct: 588 DTSDDESDDDHKSEKSSIATDTSEHPSDS----SSDSGDDSDDES 628


>SB_12387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1096

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 215 SDDLRSEKSSGGTWLSDSDADSVIHVPANAGSECDSESE 331
           SDD   E S   +   D D  S     + AG+ C+S++E
Sbjct: 147 SDDSDDEYSEADSQSDDDDVQSASEEGSGAGTGCESDNE 185


>SB_34750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 209 ETSDDLRSEKSSGGTWLSDSDADSVIHVPANAGSECDSESERE 337
           ++  D  S+  S     SDSD+DS     +++ S+ DS+S+ E
Sbjct: 86  DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSE 128



 Score = 26.6 bits (56), Expect = 8.3
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 185 LYLETIVEETSD-DLRSEKSSGGTWLSDSDADSVIHVPANAGSECDSESERE 337
           +Y +  ++  +D D  S+  S     SDSD+DS     +++ S+ DS+S+ +
Sbjct: 3   IYNDNDIDNDNDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 54


>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
          Length = 428

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +2

Query: 170 GSTHALYLETIVEETSDDLRSEKSSGGTWLSDSDADSVIHVPANAGSECDSESERE 337
           G     Y ET+ +  + +LRS   SGG  +     D  +     + SE DSESE E
Sbjct: 121 GIAQEAYDETMKDHVAQELRS---SGGLAVLRGGRDLGVADYGGSDSESDSESEEE 173


>SB_8888| Best HMM Match : Fer4 (HMM E-Value=3.9)
          Length = 689

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 251 TWLSDSDADSVIHVPANAG 307
           TWL D  +D V+H+P   G
Sbjct: 485 TWLKDVVSDGVVHMPGKCG 503


>SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013)
          Length = 872

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +2

Query: 152 HRLGDNGSTHALYLETIVEETSDDLRSEKSSGGTWLSDSDADSVIHVPANAGSECDS 322
           H +  + ST A +   ++EE SD       +  TW+S SD  S  H+    G+   S
Sbjct: 392 HSVPSSPSTPARHGRPLIEEHSDCGTMSSDTNVTWIS-SDCPSNAHLRLGDGNSTTS 447


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,571,603
Number of Sequences: 59808
Number of extensions: 257384
Number of successful extensions: 819
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)