Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0214
         (420 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41533-12|AAA83173.1|  521|Caenorhabditis elegans Hypothetical p...    28   3.1  
AF024491-4|AAZ82855.1|  365|Caenorhabditis elegans Hypothetical ...    27   4.1  
AF024491-3|AAB70311.2|  420|Caenorhabditis elegans Hypothetical ...    27   4.1  
AF039042-13|AAR12988.1|  249|Caenorhabditis elegans Hypothetical...    27   7.2  
Z81054-7|CAB02881.1|  472|Caenorhabditis elegans Hypothetical pr...    26   9.5  
U40947-1|AAC48068.1|  610|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>U41533-12|AAA83173.1|  521|Caenorhabditis elegans Hypothetical
           protein R05F9.11 protein.
          Length = 521

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +2

Query: 194 ETIVEETSDDLRSEKSSGGTWLSDSDADSVIHVPANAGSECDSESEREWACPAKRRRRER 373
           ++ +E+  D  + E+SS     SD D +     P  A ++ + E   E + P+++R+R+R
Sbjct: 221 DSAIEKVFDVDQDEQSSVDALSSDGDDEETEKDPDIAENDDNVEETIEPSLPSRKRKRKR 280


>AF024491-4|AAZ82855.1|  365|Caenorhabditis elegans Hypothetical
           protein C24A1.2b protein.
          Length = 365

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 284 IHVPANAGSECDSESEREWACPAKR 358
           +H+P++  SECDS  E   +C + +
Sbjct: 321 VHLPSDVASECDSSCESADSCDSPK 345


>AF024491-3|AAB70311.2|  420|Caenorhabditis elegans Hypothetical
           protein C24A1.2a protein.
          Length = 420

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 284 IHVPANAGSECDSESEREWACPAKR 358
           +H+P++  SECDS  E   +C + +
Sbjct: 376 VHLPSDVASECDSSCESADSCDSPK 400


>AF039042-13|AAR12988.1|  249|Caenorhabditis elegans Hypothetical
           protein ZK697.14 protein.
          Length = 249

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -3

Query: 283 DGICVRVGQP--CSTRRFFGAQIIACLLDYGFEVQSVSTAIITQSMSP 146
           DG+ V +     CS     G QI    +    E  SVSTAI+TQ+  P
Sbjct: 80  DGLTVLINNAAICSVYEIEG-QISRTYMRQQIETNSVSTAILTQNFIP 126


>Z81054-7|CAB02881.1|  472|Caenorhabditis elegans Hypothetical
           protein F01D4.4 protein.
          Length = 472

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +2

Query: 200 IVEETSDDLRSEKSSGGT--WLSDSDADSVIHVPANAGSECDSESEREWA 343
           I E +     S     GT  WL+ S AD+  H+  N  + CD  S+  +A
Sbjct: 246 IDENSQKTAYSASPDDGTFRWLAKSYADNHAHMSKNDHAPCDGTSQDAFA 295


>U40947-1|AAC48068.1|  610|Caenorhabditis elegans Hypothetical
           protein R03E9.2 protein.
          Length = 610

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 167 NGSTHALYLETIVEETSDDL 226
           N S+HAL   ++V ETS+DL
Sbjct: 484 NSSSHALITLSLVNETSEDL 503


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,052,202
Number of Sequences: 27780
Number of extensions: 180297
Number of successful extensions: 445
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)