Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0214
         (420 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   2.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   5.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   5.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.5  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 5   LGATVYFTTLCLNRNSKRKFSKI 73
           +  T+Y    CL+ +S R+ SKI
Sbjct: 635 ISTTIYENQNCLDASSSRRGSKI 657


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 242 KIFRSANHRLSPRLWFRGTK 183
           K F S + R    +W RGTK
Sbjct: 423 KWFNSLDIRTEELIWARGTK 442


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 242 KIFRSANHRLSPRLWFRGTK 183
           K F S + R    +W RGTK
Sbjct: 513 KWFNSLDIRTEELIWARGTK 532


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
            receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 10/41 (24%), Positives = 17/41 (41%)
 Frame = +2

Query: 149  RHRLGDNGSTHALYLETIVEETSDDLRSEKSSGGTWLSDSD 271
            + R+  NG      +   V+  +    + +S G  W  DSD
Sbjct: 885  QRRIQSNGLNDPTTVSLAVDTVARSNVTPRSPGRAWPGDSD 925


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,445
Number of Sequences: 438
Number of extensions: 2024
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)