Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0214
         (420 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ...    29   1.3  
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ...    29   1.3  
At5g52910.1 68418.m06566 timeless family protein contains Pfam d...    27   3.9  
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ...    27   5.2  
At4g16070.1 68417.m02437 lipase class 3 family protein low simil...    27   5.2  
At3g52320.1 68416.m05750 F-box family protein contains F-box dom...    27   5.2  
At1g63660.1 68414.m07203 GMP synthase [glutamine-hydrolyzing], p...    27   6.8  

>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
            putative similar to SP|P22082 Transcription regulatory
            protein SNF2 (SWI/SNF complex component SNF2)
            {Saccharomyces cerevisiae}; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain
          Length = 2193

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 143  SRRHRLGDNGSTHALYLETIVEE-TSDDLRSEKSSGGT 253
            +R HR+G       +Y+E +VE+ +S     E  SGG+
Sbjct: 1416 ARAHRIGQTREVKVIYMEAVVEKLSSHQKEDELRSGGS 1453


>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
            putative similar to SP|P22082 Transcription regulatory
            protein SNF2 (SWI/SNF complex component SNF2)
            {Saccharomyces cerevisiae}; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain
          Length = 2192

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 143  SRRHRLGDNGSTHALYLETIVEE-TSDDLRSEKSSGGT 253
            +R HR+G       +Y+E +VE+ +S     E  SGG+
Sbjct: 1415 ARAHRIGQTREVKVIYMEAVVEKLSSHQKEDELRSGGS 1452


>At5g52910.1 68418.m06566 timeless family protein contains Pfam
           domains PF05029: Timeless protein C terminal region and
           PF04821: Timeless protein
          Length = 1141

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +2

Query: 212 TSDDLRSEKSSGGTWLSDSDADSVIHVPANAGSECDSESEREWACPAKRRRR 367
           TS D      S    L D +AD VI       +E D   E + A P+KR+RR
Sbjct: 796 TSSDKGWAHRSLADALGDDEADVVISYDQGFQNEDDDMVEDKSAGPSKRKRR 847


>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
           protein 
          Length = 710

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
 Frame = +2

Query: 206 EETSDDLRSEKSSGGTWLSDSDADSVIH---VPANAGSECDSESEREWACPAKRRRRE 370
           E+      +E S G    SD     V H      N   E +  SEREW+  + RR RE
Sbjct: 525 EDLGSGRAAESSYGEEAASDHQYGEVNHERGARPNPVKEKERASEREWSGSSDRRNRE 582


>At4g16070.1 68417.m02437 lipase class 3 family protein low
           similarity to calmodulin-binding heat-shock protein
           CaMBP [Nicotiana tabacum] GI:1087073; contains Pfam
           profile PF01764: Lipase, PF03893: Lipase 3 N-terminal
           region
          Length = 654

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 137 MPSRRHRLGDNGSTHALYLETIVEETSDDLRSEKSSGGTWLSDSD 271
           MP     + +  ST AL  ET+  +     R+E SS  +  SD D
Sbjct: 431 MPEASAIMAERRSTEALLAETVAIDRKGHKRTEHSSSSSSESDRD 475


>At3g52320.1 68416.m05750 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 390

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 247 TRRFFGAQIIACLLDYGFEVQSVSTAIITQSMSPARH 137
           T RFF     +CL  Y  + ++ S  ++ QS S +RH
Sbjct: 64  TNRFFKPSSPSCLFAYLVDRENQSKYLLLQSSSSSRH 100


>At1g63660.1 68414.m07203 GMP synthase [glutamine-hydrolyzing],
           putative / glutamine amidotransferase, putative similar
           to SP|P38625 GMP synthase [glutamine-hydrolyzing] (EC
           6.3.5.2) (Glutamine amidotransferase) (GMP synthetase)
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF00117: glutamine amidotransferase class-I
          Length = 534

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 126 HAHITAGHHITSQDGTRSIFENFLFEF 46
           H+H+ A   +TSQDG  + + NF  +F
Sbjct: 475 HSHVVALRAVTSQDGMTADWFNFEHKF 501


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,532,294
Number of Sequences: 28952
Number of extensions: 166890
Number of successful extensions: 506
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)