Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0212
(730 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl... 223 9e-59
At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl... 223 9e-59
At1g22940.1 68414.m02867 thiamin biosynthesis protein, putative ... 36 0.028
At4g21470.1 68417.m03105 riboflavin kinase/FAD synthetase family... 30 1.4
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro... 30 1.4
At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ b... 30 1.4
At5g24160.1 68418.m02842 squalene monooxygenase 1,2 / squalene e... 30 1.8
At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 fac... 29 3.2
At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 fac... 29 3.2
At5g55820.1 68418.m06956 expressed protein 29 4.2
At1g21810.1 68414.m02729 expressed protein 29 4.2
At5g24150.1 68418.m02839 squalene monooxygenase 1,1 / squalene e... 28 5.5
At4g33520.3 68417.m04762 metal-transporting P-type ATPase, putat... 28 7.3
At1g21590.1 68414.m02699 protein kinase family protein contains ... 28 7.3
At5g45000.1 68418.m05518 Toll-Interleukin-Resistance (TIR) domai... 27 9.6
At3g63140.1 68416.m07091 mRNA-binding protein, putative similar ... 27 9.6
At2g37160.1 68415.m04559 transducin family protein / WD-40 repea... 27 9.6
At2g35480.1 68415.m04346 expressed protein 27 9.6
At1g27960.1 68414.m03425 expressed protein contains Pfam profile... 27 9.6
>At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 223 bits (545), Expect = 9e-59
Identities = 112/225 (49%), Positives = 153/225 (68%), Gaps = 2/225 (0%)
Frame = +3
Query: 42 KTITPLKSNLQYATLKTLSLVSISVMSPQQTVQELFRTADCVCFDVDSTVIQDEGIDELA 221
K + P+ +++Q L TL V P + + +L+R+ + VCFDVDSTV DEGIDELA
Sbjct: 47 KLLRPVTASVQPHELSTLGHEGNIV--PSKEILDLWRSVEAVCFDVDSTVCVDEGIDELA 104
Query: 222 KFCGKGDEVKRLTAEAMGGNMTFQEALKKRLDIIRPNVGQIREFIEKFPVRLTPGITELV 401
+FCG G V TA AMGG++ F+EAL RL + +P++ ++ E+++K P RL+PGI ELV
Sbjct: 105 EFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSKVEEYLDKRPPRLSPGIEELV 164
Query: 402 KELHERGVIVYLVSGGFRSLIEPVAERLNIPTINIFANRLKFYFNGEYAGFDENEPTSRS 581
K+L + VYL+SGGFR +I PVA L IP NIFAN L F +GE+ GFDENEPTSRS
Sbjct: 165 KKLRANNIDVYLISGGFRQMINPVASILGIPRENIFANNLLFGNSGEFLGFDENEPTSRS 224
Query: 582 GGKGLVVRRLKELHGYQRLVIVGDGATDAEASPP--ADGFIGFRG 710
GGK V+++++ Y+ + ++GDGATD EA P AD FI + G
Sbjct: 225 GGKAKAVQQIRKGRLYKTMAMIGDGATDLEARKPGGADLFICYAG 269
>At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 223 bits (545), Expect = 9e-59
Identities = 112/225 (49%), Positives = 153/225 (68%), Gaps = 2/225 (0%)
Frame = +3
Query: 42 KTITPLKSNLQYATLKTLSLVSISVMSPQQTVQELFRTADCVCFDVDSTVIQDEGIDELA 221
K + P+ +++Q L TL V P + + +L+R+ + VCFDVDSTV DEGIDELA
Sbjct: 47 KLLRPVTASVQPHELSTLGHEGNIV--PSKEILDLWRSVEAVCFDVDSTVCVDEGIDELA 104
Query: 222 KFCGKGDEVKRLTAEAMGGNMTFQEALKKRLDIIRPNVGQIREFIEKFPVRLTPGITELV 401
+FCG G V TA AMGG++ F+EAL RL + +P++ ++ E+++K P RL+PGI ELV
Sbjct: 105 EFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSKVEEYLDKRPPRLSPGIEELV 164
Query: 402 KELHERGVIVYLVSGGFRSLIEPVAERLNIPTINIFANRLKFYFNGEYAGFDENEPTSRS 581
K+L + VYL+SGGFR +I PVA L IP NIFAN L F +GE+ GFDENEPTSRS
Sbjct: 165 KKLRANNIDVYLISGGFRQMINPVASILGIPRENIFANNLLFGNSGEFLGFDENEPTSRS 224
Query: 582 GGKGLVVRRLKELHGYQRLVIVGDGATDAEASPP--ADGFIGFRG 710
GGK V+++++ Y+ + ++GDGATD EA P AD FI + G
Sbjct: 225 GGKAKAVQQIRKGRLYKTMAMIGDGATDLEARKPGGADLFICYAG 269
>At1g22940.1 68414.m02867 thiamin biosynthesis protein, putative
strong similarity to hydroxymethylpyrimidine
kinase/thiamin-phosphate pyrophosphorylase (BTH1)
GI:7488455 from [Brassica napus]
Length = 522
Score = 35.9 bits (79), Expect = 0.028
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +3
Query: 288 FQEALKKRLDIIRPNVGQIREFIEKFPVRLTPGITELVKELHERGVIVYLVSGG 449
F+E L DII PNV + ++ F + + K LHE G LV GG
Sbjct: 152 FRERLLPIADIITPNVKEASALLDGFRIETVAEMRSAAKSLHEMGPRFVLVKGG 205
>At4g21470.1 68417.m03105 riboflavin kinase/FAD synthetase family
protein contains Pfam profiles PF01687: Riboflavin
kinase / FAD synthetase, PF00702: haloacid
dehalogenase-like hydrolase
Length = 379
Score = 30.3 bits (65), Expect = 1.4
Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Frame = +3
Query: 144 LFRTADCVCFDVDSTVIQDEGI--DELAKF-CGKGDEVKRLTAEAMGGNMTFQEALKKRL 314
L + + CV D+D T+I +G+ D L K+ C G + + + G + A
Sbjct: 7 LKKLSSCVLIDLDGTLINTDGVVGDILRKYLCKYGKQWDGRESLKIVGKTPVEAATTIVE 66
Query: 315 DIIRP-NVGQIR-EFIEKF-----PVRLTPGITELVKELHERGVIVYLVSGGFRSLIE 467
D P V + EF F ++ PG L++ L GV V L S R+ IE
Sbjct: 67 DYELPCKVDEFNSEFYPLFSAQMDKIKSLPGANRLIRHLKCHGVPVALASNSSRANIE 124
>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400); similar to
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]; contains non-consensus (GC) donor splice
sites at introns 4 and 6
Length = 1017
Score = 30.3 bits (65), Expect = 1.4
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Frame = +3
Query: 234 KGDEVKRLTAEAMGGN---MTFQEALKKRLDIIRPNVGQIREFIEKFPVRLT-PGITELV 401
+GD V+ LT + G+ + + + + RL++ R +F+ +FP+ PG + +
Sbjct: 89 EGDVVEELTVKTCEGSSMAIVGRPSSRARLEMNRS------QFLHRFPLDGDLPGSSSMS 142
Query: 402 KELHERGVIVYLVSGGFRSLIEPVAERLNIPTINIFAN 515
K++ +RG + L + G SL E +L I +N AN
Sbjct: 143 KKVIDRGTVSILRNAGKMSLPETSNGQLAIIAVNGEAN 180
>At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ
boundaries domain protein 13 (LBD13) identical to LOB
DOMAIN 13 [Arabidopsis thaliana] GI:17227158 SP|Q9AT61
Length = 268
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -1
Query: 277 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSA 155
PP LL+S P P S+PS M V S+S SA
Sbjct: 199 PPTPRPPRLLSSQPAPPPTPPVSLPSPSMVVSSSSSSNSSA 239
>At5g24160.1 68418.m02842 squalene monooxygenase 1,2 / squalene
epoxidase 1,2 (SQP1,2) identical to SP|O65402
Length = 517
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +3
Query: 270 MGGNMTFQEALKKRLDIIRPNVGQIREFIEKFPVRLTPGITELVKELHERGVIVYLVSGG 449
+G E + DI +P + F L G T+ KE +GV YL SGG
Sbjct: 369 LGDANKVSEVINSFYDIRKPMSATVNTLGNAFSQVLI-GSTDEAKEAMRQGVYDYLCSGG 427
Query: 450 FRS 458
FR+
Sbjct: 428 FRT 430
>At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 575
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 389 YRVSERVTRERSHRISSFGRIQESNRT 469
YR ER++RE + R+ GRI + T
Sbjct: 289 YREKERISREEAWRVQEIGRINREHET 315
>At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 498
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 389 YRVSERVTRERSHRISSFGRIQESNRT 469
YR ER++RE + R+ GRI + T
Sbjct: 212 YREKERISREEAWRVQEIGRINREHET 238
>At5g55820.1 68418.m06956 expressed protein
Length = 1826
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 493 GMFSLSATGSIRLLNPPETRYTMTPLSCNSFTNSVIP 383
G + G+ R + PP +R++ LSCNS +V P
Sbjct: 1442 GKENQGGAGAKRNVKPPSSRFSKPKLSCNSSLTTVGP 1478
>At1g21810.1 68414.m02729 expressed protein
Length = 628
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +3
Query: 243 EVKRLTAEAMGGNMTFQEALKKRLDIIRPNVGQIREFIEKFPVRLTPGITELVKELH 413
E+K+ +A N+ ++ + ++ V Q+R+F ++ + +TE KELH
Sbjct: 42 ELKQKLEDAADKNIVLEDRVSHLDGALKECVRQLRQFRDEQEKNIQAAVTESTKELH 98
>At5g24150.1 68418.m02839 squalene monooxygenase 1,1 / squalene
epoxidase 1,1 (SQP1,1) identical to SP|O65404
Length = 516
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = +3
Query: 270 MGGNMTFQEALKKRLDIIRPNVGQIREFIEKFPVRLTPGITELVKELHERGVIVYLVSGG 449
+G + +K DI +P + F L T+ KE +G YL SGG
Sbjct: 368 LGNAQKISQVIKSFYDIRKPMSATVNTLGNAFSQVLVAS-TDEAKEAMRQGCYDYLSSGG 426
Query: 450 FRS 458
FR+
Sbjct: 427 FRT 429
>At4g33520.3 68417.m04762 metal-transporting P-type ATPase, putative
(PAA1) nearly identical to gi:2668492; contains Pfam
heavy-metal-associated domain PF00403
Length = 949
Score = 27.9 bits (59), Expect = 7.3
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = -1
Query: 391 VIPGVSLTGNFSMNSLI*PTLGLMMSSLFFNASWNVILPPIASAVSLLTSSPFPQNLASS 212
V+ G LT L T+ + +L++ +N++ PIA+ V L P + +
Sbjct: 839 VLMGNRLTQLLDAMELSRQTMKTVKQNLWWAFGYNIVRIPIAAGVLL----PLTGTMLTP 894
Query: 211 SMPSSCMTVESTSKQTQSAVL 149
SM + M V S T S +L
Sbjct: 895 SMAGALMGVSSLGVMTNSLLL 915
>At1g21590.1 68414.m02699 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 756
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/19 (73%), Positives = 14/19 (73%)
Frame = +3
Query: 360 KFPVRLTPGITELVKELHE 416
KFP LTP IT LVKEL E
Sbjct: 265 KFPEDLTPFITMLVKELPE 283
>At5g45000.1 68418.m05518 Toll-Interleukin-Resistance (TIR)
domain-containing protein domain signature TIR exists,
suggestive of a disease resistance protein.
Length = 371
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 359 LNEFSDLTDVRPDDVQSLLQRFLECHIA 276
+N F+D +VR D+Q+LL R E +A
Sbjct: 43 INVFTDEIEVRGRDIQNLLSRIEESRVA 70
>At3g63140.1 68416.m07091 mRNA-binding protein, putative similar to
mRNA binding protein precursor (GI:26453355)
[Lycopersicon esculentum]
Length = 406
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = -1
Query: 325 LMMSSLFFNASW-----NVILPPIASAVSLLTSSPFPQNLASSSMPSSCM 191
L SSLFF++ N+++PP SL +SS +L+SSS SS +
Sbjct: 4 LSSSSLFFSSKTTSPISNLLIPPSLHRFSLPSSSSSFSSLSSSSSSSSSL 53
>At2g37160.1 68415.m04559 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 544
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 20 KHVHICNKNDNPFEKQPAVRDVEDALTGVDQRDVASTDGPGVVQDSG 160
K +HI N N P +D D L G++ DV + +QD G
Sbjct: 171 KSIHISNSNPMCHAFHPDAKDGHDLLIGLNSGDVYTVSLRQQLQDVG 217
>At2g35480.1 68415.m04346 expressed protein
Length = 195
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/58 (22%), Positives = 31/58 (53%)
Frame = +3
Query: 258 TAEAMGGNMTFQEALKKRLDIIRPNVGQIREFIEKFPVRLTPGITELVKELHERGVIV 431
TA +G T++ ALK + ++ P +IR+F+ + ++ + K + +R +++
Sbjct: 10 TAYFLGIRRTYRLALKTQRRLVSPKHPRIRDFMHRRTYQIFDMALRVHKNIQQRDMVI 67
>At1g27960.1 68414.m03425 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 539
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 174 DVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGN 281
+ D +V+QD+ I FCG+G E + A+ N
Sbjct: 24 NTDQSVLQDQDIVSSRPFCGQGTESFHIGADTPRSN 59
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,085,751
Number of Sequences: 28952
Number of extensions: 307392
Number of successful extensions: 1172
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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