Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0211
(331 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr... 70 8e-14
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa... 29 0.14
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 26 1.3
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 26 1.7
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 26 1.7
SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar... 25 2.2
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 25 2.2
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 3.9
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo... 25 3.9
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces... 24 5.2
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo... 24 6.8
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 24 6.8
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe... 24 6.8
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 24 6.8
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 23 9.0
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 23 9.0
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 23 9.0
>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 308
Score = 70.1 bits (164), Expect = 8e-14
Identities = 30/81 (37%), Positives = 50/81 (61%)
Frame = +2
Query: 89 SRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNF 268
SR ++LAW+N +IE+ G A Q D ++ +P+K++ F+ N E++YI N+
Sbjct: 4 SRQELLAWINQVTSLGLTRIEDCGKGYAMIQIFDSIYQ-DIPLKKVNFECNNEYQYINNW 62
Query: 269 KILQAGFKKMGVDKIVPIDKL 331
K+LQ F K G+DK+V ++L
Sbjct: 63 KVLQQVFLKKGIDKVVDPERL 83
>SPBC21C3.18 |spo4||serine/threonine protein kinase
Spo4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 29.5 bits (63), Expect = 0.14
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 212 PMKRIKFKTNLEHEYIQNFKILQAGFK 292
P KR+K KT L+HE+ + ++GF+
Sbjct: 388 PSKRVKAKTALQHEFFNACGVTRSGFE 414
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 26.2 bits (55), Expect = 1.3
Identities = 9/37 (24%), Positives = 25/37 (67%)
Frame = +1
Query: 73 YVRKSIAA*YASVGE*LSPVKLCEDRRVVYRCRLLPV 183
Y++ ++ ++S+ + SP+ + E+++ ++R +LPV
Sbjct: 58 YLKNRVSRSWSSIDDAPSPLDIPEEQKALFRQNILPV 94
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.8 bits (54), Expect = 1.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 227 KFKTNLEHEYIQNFKILQAGFK 292
K TNLE+EY +KI+Q FK
Sbjct: 748 KSSTNLENEYQTPWKIIQNPFK 769
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 25.8 bits (54), Expect = 1.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 229 FDSFHWYTAREQHVHELAIGGTCTQLF 149
FD WYT R + + L+I QLF
Sbjct: 109 FDDMRWYTRRRKSIPNLSIKLYAFQLF 135
>SPCC970.06 |||cargo receptor for soluble proteins
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 302
Score = 25.4 bits (53), Expect = 2.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 57 TFTAIFTMYQPLIKKFLTV 1
TF A FT Y PL+ +FL V
Sbjct: 45 TFMAPFTPYMPLLGRFLIV 63
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 25.4 bits (53), Expect = 2.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 207 VYQ*KESNLRQIWNMNIYRTLKYYKLVL 290
++Q S LR I N+N+Y+ + KL++
Sbjct: 654 IFQIHASQLRYIDNLNVYKNWAFRKLLI 681
>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 24.6 bits (51), Expect = 3.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 264 FCIYSCSKFVLNLILFIGTLP 202
F IYSC++ + N L + TLP
Sbjct: 171 FSIYSCAEKISNTSLLLCTLP 191
>SPAC26H5.07c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 505
Score = 24.6 bits (51), Expect = 3.9
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = -2
Query: 279 CNILKFCIYSCSKFVLNLILFIGTLPGNSMSMNWQ*AAPVHNSSIFAKFDW 127
C IL + S F L+ LFI P N S+ AAPV ++FA F W
Sbjct: 289 CQILAGLQFVSSCFFLSS-LFIS--PSNKESLVILFAAPVFLITLFAMFLW 336
>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 24.2 bits (50), Expect = 5.2
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +3
Query: 162 QVPPIASSWTCCSLAVYQ*KESNLRQIW 245
+VP +A W C L + L QIW
Sbjct: 85 KVPTLAEQWECTRLVLLSHFTVELPQIW 112
>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 411
Score = 23.8 bits (49), Expect = 6.8
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = +1
Query: 37 SKNGCKCIFYERYVRKS 87
SK G +C+F+ER ++K+
Sbjct: 293 SKIGAQCVFWERSLQKA 309
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 23.8 bits (49), Expect = 6.8
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 218 KRIKFKTNLEHEY 256
K +KFKTN H Y
Sbjct: 5 KEVKFKTNFHHPY 17
>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 659
Score = 23.8 bits (49), Expect = 6.8
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = +2
Query: 116 NDCLQSNFAKIEELCTGAAYCQFMDMLFPGSV-PMKRIKFKTNLEHEY 256
+D + SNF E G + +F+D + P V I LE Y
Sbjct: 96 SDTISSNFLSKYEYSNGTSTSEFIDSISPPLVNETSTISSSKKLEQNY 143
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 23.8 bits (49), Expect = 6.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 124 SPVKLCEDRRVVYRCRLLPVH 186
+P K D V+YRC LLP H
Sbjct: 355 NPNKAMRDP-VIYRCNLLPHH 374
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 23.4 bits (48), Expect = 9.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 35 IVKMAVNVYSTNVTSENLSRHDMLAWVND 121
I+K NVY + +L D++ W ND
Sbjct: 548 IIKSTTNVYLKVNSETSLPTGDIVEWQND 576
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 23.4 bits (48), Expect = 9.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 96 CRDRFSDVTFVEYTFTAIFTMYQPLI 19
CRD FV+Y + I +++PL+
Sbjct: 889 CRDELITFLFVDYADSKIQDIHRPLL 914
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 23.4 bits (48), Expect = 9.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 41 KMAVNVYSTNVTSENLSRHDMLAWVND 121
K A +V S+N+T + + R L W D
Sbjct: 192 KGASSVISSNITRQGIKRSRTLPWAVD 218
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,473,103
Number of Sequences: 5004
Number of extensions: 29071
Number of successful extensions: 81
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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