Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0211
(331 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0523 - 18518158-18518442,18518786-18518899,18518994-185192... 85 1e-17
04_04_1332 + 32718584-32718706,32718892-32718960,32719069-327191... 85 1e-17
06_01_0503 - 3596664-3596837,3597647-3598069,3598362-3598595,359... 31 0.29
11_01_0669 - 5454116-5454153,5454569-5454770,5454865-5455029,545... 29 1.2
09_04_0126 + 14874739-14875581 27 2.7
06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315 27 2.7
02_03_0176 + 16010806-16011095,16011983-16012061,16012389-160124... 27 2.7
01_06_1169 - 35082160-35082292,35082572-35082651,35082727-350829... 27 3.6
07_03_1211 - 24908295-24908534,24908928-24909005,24909542-249097... 27 4.7
03_01_0125 + 977572-977879,978155-978275,979673-979846,979985-98... 27 4.7
12_01_0150 + 1155658-1156087,1156319-1156383,1156506-1156569,115... 26 6.2
02_05_0322 - 27926619-27927686 26 6.2
03_02_0798 - 11321590-11321685,11321802-11321888,11321972-113220... 26 8.3
>10_08_0523 -
18518158-18518442,18518786-18518899,18518994-18519219,
18519364-18519470,18519809-18519964,18520100-18520210
Length = 332
Score = 85.0 bits (201), Expect = 1e-17
Identities = 35/82 (42%), Positives = 54/82 (65%)
Frame = +2
Query: 86 LSRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQN 265
+ R+++LAW+N LQ +K+EE +GA CQ MD PG+VPM ++ F E+E IQN
Sbjct: 15 VGRNEILAWINTTLQLGLSKVEEAASGAVACQLMDAAHPGAVPMHKVNFDAKTEYEMIQN 74
Query: 266 FKILQAGFKKMGVDKIVPIDKL 331
+K+LQ F K+ + K + ++KL
Sbjct: 75 YKVLQDVFNKLKITKHIEVNKL 96
>04_04_1332 +
32718584-32718706,32718892-32718960,32719069-32719155,
32719865-32719971,32720066-32720187,32720462-32720535,
32720833-32720946,32721100-32721213
Length = 269
Score = 85.0 bits (201), Expect = 1e-17
Identities = 36/82 (43%), Positives = 55/82 (67%)
Frame = +2
Query: 86 LSRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQN 265
+ R ++L+W+N LQ + AK+EE +GA CQ MDM+ PG VPM ++ F E++ IQN
Sbjct: 19 VGRGEILSWINATLQLSLAKVEEAASGAVQCQLMDMVHPGVVPMHKVNFDAKTEYDMIQN 78
Query: 266 FKILQAGFKKMGVDKIVPIDKL 331
+KILQ F K+ + K + ++KL
Sbjct: 79 YKILQDVFNKLRLSKNIEVNKL 100
>06_01_0503 -
3596664-3596837,3597647-3598069,3598362-3598595,
3598720-3598993,3599390-3599523,3599572-3599634,
3599759-3599846,3599919-3599989,3600898-3601010,
3601836-3602004,3602580-3602671,3602819-3603295,
3603736-3604090
Length = 888
Score = 30.7 bits (66), Expect = 0.29
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 203 QGTACP*TGNRRHLYTTLRSSQSLTGDNHSPTLAYHAAIDF 81
QGT+C RH T LR++ TG + +L H A+D+
Sbjct: 733 QGTSCRGVNWDRHSLTDLRAAVVCTGGHRLASLLRHLALDY 773
>11_01_0669 -
5454116-5454153,5454569-5454770,5454865-5455029,
5455278-5456183
Length = 436
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = +2
Query: 131 SNFAKIEEL-CTGAAY---CQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAGF 289
SN KI E+ C G C+F+ L +P+++I K EH + F + GF
Sbjct: 377 SNHLKIVEIKCKGKEVMWVCKFLKTLGTFGIPLEKINIKLTSEHCRSECFNFVCTGF 433
>09_04_0126 + 14874739-14875581
Length = 280
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +2
Query: 119 DCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEY 256
D L++ FA I E+ Y MD FPG V FK+N + Y
Sbjct: 20 DNLEAEFAVIREIVDDFPYVA-MDTEFPGVVCRPLGTFKSNADFNY 64
>06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315
Length = 678
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +3
Query: 129 SQTLRRSKSCVQVPPIASSWTCCSLA 206
S T RS S P SSWTC S A
Sbjct: 632 SATASRSASPTSARPATSSWTCTSAA 657
>02_03_0176 +
16010806-16011095,16011983-16012061,16012389-16012464,
16012541-16012630,16012878-16013031,16013172-16013181,
16013240-16013407,16014087-16014485,16014580-16014990
Length = 558
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 126 SSQTLRRSKSCVQVPPIASSWTCCS 200
S + R S SC PPI WT CS
Sbjct: 166 SRKRKRGSNSCSSDPPINLEWTLCS 190
>01_06_1169 -
35082160-35082292,35082572-35082651,35082727-35082939,
35083243-35083323,35083381-35083492,35083697-35083786,
35083986-35084176,35084683-35084762,35085266-35085347,
35085506-35085590,35086261-35086379
Length = 421
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 198 NSMSMNWQ*AAPVHNSSIFAKFDWRQSFTHASISC 94
N + +N+ + +HN+S+ F W +F+H SC
Sbjct: 156 NILGINFSRTSYMHNASLLLYFPW--AFSHRQCSC 188
>07_03_1211 -
24908295-24908534,24908928-24909005,24909542-24909748,
24909849-24910038,24910195-24910532
Length = 350
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 55 CIFYERYVRKSIAA*YASVGE*LSPVKLCEDRRVVYRCRLL 177
C + + + AA +VG+ ++L D+ V+Y+CR+L
Sbjct: 169 CASHITFENSAAAAAPGAVGQQAVALRLSGDKTVLYKCRIL 209
>03_01_0125 +
977572-977879,978155-978275,979673-979846,979985-980148,
980245-980332,980426-980479,980571-980651,980895-981068
Length = 387
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 212 PMKRIKFKTNLEHEYIQNFKILQAGFK 292
P KRI + LEHEY ++ +++Q +
Sbjct: 310 PNKRITARQALEHEYFKDLEMIQIALR 336
>12_01_0150 +
1155658-1156087,1156319-1156383,1156506-1156569,
1156988-1157115
Length = 228
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 117 MIVSSQTLRRSKSCVQVPPIASS 185
++ SS T RR SC+ +PP SS
Sbjct: 59 LLFSSPTPRRPSSCLSLPPPCSS 81
>02_05_0322 - 27926619-27927686
Length = 355
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -1
Query: 244 QICLKFDSFHWYTAREQHVHELAIGGTCTQLFDLRKV*LET 122
+ C SF W A + + +I TCT ++D+ + +ET
Sbjct: 141 EFCAPLTSFDWNEAEPRRIGTASIDTTCT-IWDIERGVVET 180
>03_02_0798 -
11321590-11321685,11321802-11321888,11321972-11322082,
11322169-11322515,11322570-11322612,11322669-11322749,
11323321-11323596,11325277-11325552
Length = 438
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 266 SSVYIHVPNLS*I*FFSLVHCQGTACP 186
SSVY+HV +S + L H T+CP
Sbjct: 210 SSVYVHVHGMSCLSSAVLNHIVNTSCP 236
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,048,392
Number of Sequences: 37544
Number of extensions: 168962
Number of successful extensions: 401
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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