Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0211
(331 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g67270.1 68418.m08480 microtubule-associated EB1 family prote... 92 7e-20
At5g62500.1 68418.m07844 microtubule-associated EB1 family prote... 86 6e-18
At3g47690.1 68416.m05194 microtubule-associated EB1 family prote... 84 2e-17
At5g02930.1 68418.m00236 F-box family protein low similarity to ... 31 0.14
At2g32070.1 68415.m03919 CCR4-NOT transcription complex protein,... 30 0.33
At4g04800.1 68417.m00702 methionine sulfoxide reductase domain-c... 27 3.0
At4g30990.1 68417.m04398 expressed protein ; expression supporte... 26 5.3
At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related ... 26 5.3
At4g19220.1 68417.m02835 pentatricopeptide (PPR) repeat-containi... 26 7.0
At3g13550.1 68416.m01703 ubiquitin-conjugating enzyme (COP10) id... 26 7.0
At3g07690.1 68416.m00923 NAD-dependent glycerol-3-phosphate dehy... 26 7.0
At5g24520.3 68418.m02893 transparent testa glabra 1 protein (TTG... 25 9.3
At5g24520.2 68418.m02892 transparent testa glabra 1 protein (TTG... 25 9.3
At5g24520.1 68418.m02891 transparent testa glabra 1 protein (TTG... 25 9.3
At1g80780.2 68414.m09478 CCR4-NOT transcription complex protein,... 25 9.3
At1g80780.1 68414.m09477 CCR4-NOT transcription complex protein,... 25 9.3
>At5g67270.1 68418.m08480 microtubule-associated EB1 family protein
similar to SP|Q9UPY8 Microtubule-associated protein
RP/EB family member 3 (Protein EB3) {Homo sapiens};
contains Pfam profiles PF00307: Calponin homology (CH)
domain, PF03271: EB1 protein
Length = 329
Score = 92.3 bits (219), Expect = 7e-20
Identities = 37/82 (45%), Positives = 56/82 (68%)
Frame = +2
Query: 86 LSRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQN 265
+ R ++LAW+N LQ N +K+EE C+GA +CQ MD + PG+VPM ++ F E+E IQN
Sbjct: 14 VGRSEILAWINSTLQLNLSKVEEACSGAVHCQLMDSVHPGTVPMHKVNFDAKSEYEMIQN 73
Query: 266 FKILQAGFKKMGVDKIVPIDKL 331
+K+LQ F K+ + K + + KL
Sbjct: 74 YKVLQDVFNKLKITKHIEVSKL 95
>At5g62500.1 68418.m07844 microtubule-associated EB1 family protein
similar to EBF3-S (Microtubule-associated protein) [Homo
sapiens] GI:12751131; contains Pfam profiles PF00307:
Calponin homology (CH) domain, PF03271: EB1 protein
Length = 293
Score = 85.8 bits (203), Expect = 6e-18
Identities = 34/82 (41%), Positives = 57/82 (69%)
Frame = +2
Query: 86 LSRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQN 265
+ R+++L+W+ND L N ++IEE +GA CQ +DM FPG VPM ++ F+ E+E IQN
Sbjct: 14 VGRNEILSWINDRLHLNLSRIEEAASGAVQCQMLDMTFPGVVPMHKVNFEAKNEYEMIQN 73
Query: 266 FKILQAGFKKMGVDKIVPIDKL 331
+K++Q F K+ + K + +++L
Sbjct: 74 YKVMQEVFTKLKITKPLEVNRL 95
>At3g47690.1 68416.m05194 microtubule-associated EB1 family protein
similar to SP|Q9UPY8 Microtubule-associated protein
RP/EB family member 3 (Protein EB3) {Homo sapiens};
contains Pfam profile PF03271: EB1 protein
Length = 276
Score = 84.2 bits (199), Expect = 2e-17
Identities = 34/82 (41%), Positives = 55/82 (67%)
Frame = +2
Query: 86 LSRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQN 265
+ R+++L W+ND L N +++EE +GA CQ +DM FPG VPM ++ F E++ IQN
Sbjct: 14 VGRNEILTWINDRLHLNLSRVEEAASGAVQCQMLDMTFPGVVPMHKVNFDAKNEYDMIQN 73
Query: 266 FKILQAGFKKMGVDKIVPIDKL 331
+K+LQ F K+ + K + I++L
Sbjct: 74 YKVLQDVFNKLKITKPLEINRL 95
>At5g02930.1 68418.m00236 F-box family protein low similarity to
ribosomal RNA apurinic site specific lyase [Triticum
aestivum] GI:6505722; contains F-box domain Pfam:PF00646
Length = 469
Score = 31.5 bits (68), Expect = 0.14
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 86 LSRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKFKT 238
L HD+L V L++ F K+E+L G Q + + S+P+ +K KT
Sbjct: 285 LDPHDLLVMVQTMLKT-FQKVEKLTLGVNLLQMLSLSKIPSLPLPMLKVKT 334
>At2g32070.1 68415.m03919 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 275
Score = 30.3 bits (65), Expect = 0.33
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = +2
Query: 116 NDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEY 256
ND L+S A I E+ + MD FPG V FKTN E+ Y
Sbjct: 17 NDNLESEMALIREVVDDFPFVA-MDTEFPGIVCRPVGTFKTNTEYHY 62
>At4g04800.1 68417.m00702 methionine sulfoxide reductase
domain-containing protein / SeIR domain-containing
protein low similarity to pilin-like transcription
factor [Homo sapiens] GI:5059062, SP|P14930 Peptide
methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6)
{Neisseria gonorrhoeae}; contains Pfam profile PF01641:
SelR domain
Length = 176
Score = 27.1 bits (57), Expect = 3.0
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +2
Query: 125 LQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKIL-QAGFKKMG 301
LQS+ + + +C + + M PGSV +++ L E F+IL Q G + G
Sbjct: 19 LQSSIVESDSICLSSGVASTVAMAAPGSVQKGDEEWRAILSPE---QFRILRQKGTEYPG 75
Query: 302 VDKIVPIDK 328
+ V DK
Sbjct: 76 TGEYVNFDK 84
>At4g30990.1 68417.m04398 expressed protein ; expression supported by
MPSS
Length = 2138
Score = 26.2 bits (55), Expect = 5.3
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -1
Query: 316 YYLVHTHLFKTSL*YFKVLYIFMFQICLKFDSFHWYTAREQHVHELAIGGTCTQ 155
YY + F+ + K I + ICL D FH+ A++ + HE TC Q
Sbjct: 1520 YYALLNRCFREMNKHTKKGKILLRLICLILDKFHF--AKDGYPHEAEEIRTCLQ 1571
>At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related
contains weak similarity to Swiss-Prot:P10366 ATP
phosphoribosyltransferase [Escherichia coli]
Length = 1402
Score = 26.2 bits (55), Expect = 5.3
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 92 RHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIK 229
RHD + D + + +E C AA + + FPGSV +R K
Sbjct: 451 RHDFILSNRDAVDEYWLTLE-YCYAAADHRAAKLAFPGSVVQERAK 495
>At4g19220.1 68417.m02835 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 932
Score = 25.8 bits (54), Expect = 7.0
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -2
Query: 324 SMGTILSTPIFLKPACNILKFCI--YSCSKFVLNLILFIGTLPGNSMSM 184
SM + S F A N+ K + YSCSKF L+ +L I T +S S+
Sbjct: 465 SMISAFSQNGFTHKAKNLFKEVVSEYSCSKFSLSTVLAILTSCDSSDSL 513
>At3g13550.1 68416.m01703 ubiquitin-conjugating enzyme (COP10)
identical to ubiquitin-conjugating enzyme COP10
[Arabidopsis thaliana] GI:20065779; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 182
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = +2
Query: 182 FMDMLFPGSVPMK--RIKFKTNLEH 250
F+D++FP P K ++ FKT + H
Sbjct: 86 FLDIIFPSDYPFKPPKLVFKTRIYH 110
>At3g07690.1 68416.m00923 NAD-dependent glycerol-3-phosphate
dehydrogenase family protein weak similarity to
SP|P46919 Glycerol-3-phosphate dehydrogenase [NAD(P)+]
(EC 1.1.1.94) {Bacillus subtilis}; contains Pfam profile
PF01210: NAD-dependent glycerol-3-phosphate
dehydrogenase
Length = 455
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +1
Query: 4 GQEFFNQGLIHSKNGCKCIFYERYVRKSIAA*YASVGE*LSPVKLCEDRRVVYR 165
G +G+I + K F+E + S++ + G+ ++P +LC +++YR
Sbjct: 357 GDSIKGKGMIQGVSAVKA-FFELLNQSSLSLQHPEEGKPVTPAELCPILKMLYR 409
>At5g24520.3 68418.m02893 transparent testa glabra 1 protein (TTG1)
identical to transparent testa glabra 1 (Ttg1) protein
(GI:10177852) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies,1 weak);
Length = 341
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -1
Query: 244 QICLKFDSFHWYTAREQHVHELAIGGTCTQLFDLRKV*LET 122
+ C SF W + + +I TCT ++D+ K +ET
Sbjct: 130 EFCAPLTSFDWNDVEPKRLGTCSIDTTCT-IWDIEKSVVET 169
>At5g24520.2 68418.m02892 transparent testa glabra 1 protein (TTG1)
identical to transparent testa glabra 1 (Ttg1) protein
(GI:10177852) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies,1 weak);
Length = 341
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -1
Query: 244 QICLKFDSFHWYTAREQHVHELAIGGTCTQLFDLRKV*LET 122
+ C SF W + + +I TCT ++D+ K +ET
Sbjct: 130 EFCAPLTSFDWNDVEPKRLGTCSIDTTCT-IWDIEKSVVET 169
>At5g24520.1 68418.m02891 transparent testa glabra 1 protein (TTG1)
identical to transparent testa glabra 1 (Ttg1) protein
(GI:10177852) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies,1 weak);
Length = 341
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -1
Query: 244 QICLKFDSFHWYTAREQHVHELAIGGTCTQLFDLRKV*LET 122
+ C SF W + + +I TCT ++D+ K +ET
Sbjct: 130 EFCAPLTSFDWNDVEPKRLGTCSIDTTCT-IWDIEKSVVET 169
>At1g80780.2 68414.m09478 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 274
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +2
Query: 116 NDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEY 256
ND LQ I ++ Y MD FPG V FK+N ++ Y
Sbjct: 17 NDNLQEEMDLIRDVVDDFPYVA-MDTEFPGIVVRPVGTFKSNADYHY 62
>At1g80780.1 68414.m09477 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 274
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +2
Query: 116 NDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEY 256
ND LQ I ++ Y MD FPG V FK+N ++ Y
Sbjct: 17 NDNLQEEMDLIRDVVDDFPYVA-MDTEFPGIVVRPVGTFKSNADYHY 62
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,500,393
Number of Sequences: 28952
Number of extensions: 144022
Number of successful extensions: 352
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 380568784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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