Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0210
(496 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 29 0.38
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 27 1.6
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha... 27 1.6
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 25 4.7
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 4.7
SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|... 25 6.3
SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subun... 25 6.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 6.3
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 25 8.3
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 25 8.3
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 25 8.3
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 29.1 bits (62), Expect = 0.38
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 275 EDIFNCEEEIDENLERAPTSMLPDEDDPLSPE 370
+ ++ C E+ ENL RA TS+LP LS E
Sbjct: 662 QSLYYCPIELIENLLRAITSLLPKNTSNLSDE 693
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 27.1 bits (57), Expect = 1.6
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +2
Query: 224 STADKSFYGTHEQCQSNEDIFNCEEEIDENLERAPTSMLPDEDDPLSPENLVQDN 388
ST+ SFY NE IFN +EE++E+ + +DP PEN+ +N
Sbjct: 11 STSLSSFY-----VLENETIFNVQEEMEEDGSESGNIQKTLLEDP-CPENVNDEN 59
>SPCC1322.14c |vtc4||vacuolar transporter chaperone
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 27.1 bits (57), Expect = 1.6
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 233 DKSF-YGTHEQCQSNEDIFNCEEEIDENLERAPTSMLPDEDDPLSPENLVQDNVKHFCRL 409
DK + + ++ + E I CEE+ DE + R + P+E+D E + D + L
Sbjct: 55 DKVYSFQKNKSAEVMERIRFCEEQTDEVVRRLDSDNPPNENDFAILETELTDIMATVHDL 114
Query: 410 MKFANGHSPALY 445
KF+ + A Y
Sbjct: 115 AKFSELNYTAFY 126
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 25.4 bits (53), Expect = 4.7
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 293 EEEIDENLERAPTSMLPDEDDPL-SPENLVQ 382
E+E D ++E + +S+ DED PL P VQ
Sbjct: 244 EDEEDSDVELSESSLSDDEDSPLRCPSTPVQ 274
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 4.7
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Frame = +3
Query: 105 THSVSSVNAVLILPKLRTAGTITTC----LARWECCTSAAPA*CRRQTKVSTEPTNSVSR 272
THSV+S N I+P T+ TT T+ P T + PT V+
Sbjct: 58 THSVTSTNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNS 117
Query: 273 T 275
T
Sbjct: 118 T 118
>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 572
Score = 25.0 bits (52), Expect = 6.3
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +2
Query: 140 ITKAANSGDDHHLFSSLGMLHECSPSMMSTADKSFYGTHEQCQSNEDIFNCEEEI 304
I +A N+G+ H +G HE + ++ + S T +C ++D +C +E+
Sbjct: 502 IVEAFNAGEGHAKGFRVGNGHELAEAIRQAKENSQGPTLIECNIDQD--DCSKEL 554
>SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subunit
Rpc31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 25.0 bits (52), Expect = 6.3
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = +2
Query: 293 EEEIDENLERAPTSMLPDEDDPLS----PENLVQ 382
+E ++ N PT + PD D PL PE L++
Sbjct: 17 QEVLEFNANSTPTKLYPDRDIPLQRSIRPEELLE 50
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 6.3
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = +2
Query: 245 YGTHEQCQSNEDIFNCEEEIDENLERAPTSMLPDEDDPLSPENLVQDNVKHFCRLMKFAN 424
Y THE ED E+ DEN + E++ + PE + ++ R+ K +
Sbjct: 380 YSTHEPESEPEDQDEPSEKDDENKDVEEEQEQEQEEEQIDPEEAKRIALRE--RMAKMSG 437
Query: 425 G 427
G
Sbjct: 438 G 438
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 24.6 bits (51), Expect = 8.3
Identities = 21/93 (22%), Positives = 36/93 (38%)
Frame = +2
Query: 203 ECSPSMMSTADKSFYGTHEQCQSNEDIFNCEEEIDENLERAPTSMLPDEDDPLSPENLVQ 382
EC+P M S+ D+ + + D+FN + + + L D D+ L+PE +
Sbjct: 440 ECNPGMFSSQDQCYILVFSLMMLHTDVFNSNNK--HKMTKQEFINLCDIDE-LAPE--IM 494
Query: 383 DNVKHFCRLMKFANGHSPALYFSMDPEEERNVT 481
+ F N L + E+ N T
Sbjct: 495 EYYYDNITFTPFVNLDDELLLIEKEKNEKYNFT 527
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 24.6 bits (51), Expect = 8.3
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +2
Query: 197 LHECSPSMMSTADKSFYGTHEQCQSNEDIFNCEEEIDENLERAPTSMLPDEDD 355
+++ S + + +K++ H + D+ CE+ ID+ L+R +PD D
Sbjct: 664 IYKLSDRISNFREKAWSTEHLE-HLTSDMSMCEKRIDQVLQRVMDLRVPDLSD 715
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 8.3
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 239 SFYGTHEQCQSNEDIFNCEEEIDENLERAPTSMLPDEDDPLSPENL 376
S G+ +SN + + +I LE A T ED+PL +N+
Sbjct: 451 SITGSSPTEESNALVEDTSVDISATLEEANTQQENAEDEPLVSDNV 496
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,965,643
Number of Sequences: 5004
Number of extensions: 38888
Number of successful extensions: 133
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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