Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0210
         (496 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11329| Best HMM Match : DUF1151 (HMM E-Value=0.0015)                31   0.69 
SB_5430| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.91 
SB_45871| Best HMM Match : ABC_tran (HMM E-Value=2.5e-08)              29   1.6  
SB_15869| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_13745| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.4  
SB_1699| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.4  
SB_54973| Best HMM Match : RVP (HMM E-Value=2.6)                       27   8.5  

>SB_11329| Best HMM Match : DUF1151 (HMM E-Value=0.0015)
          Length = 746

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 22/74 (29%), Positives = 38/74 (51%)
 Frame = +3

Query: 162 GTITTCLARWECCTSAAPA*CRRQTKVSTEPTNSVSRTKIFLIVKKK*TKT*SEHQHQCS 341
           GT+T CL   EC  S   +  ++  ++S + ++ +SR K   I +KK  +   E  H+ S
Sbjct: 65  GTVTVCL---ECKKSHRIS-RKKSHRISRKKSHRISRKKSHRISRKKSHRISREKSHRIS 120

Query: 342 RTKMILYRQKISYK 383
           R K     +K S++
Sbjct: 121 RKKSHRISRKKSHR 134


>SB_5430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +2

Query: 209 SPSMMSTADKSFYGTHEQCQSNEDIFNCEEEIDENLERAPTSMLPDEDDPLSPENLVQDN 388
           S S+  + + S   +     S+ D  +  E  D++ E   TS  P ED+PL+    ++D 
Sbjct: 4   SESLSDSVEYSADRSQPSSISDSDEGHLSEVSDDSTEEYSTSFAPYEDEPLARPGTIEDE 63

Query: 389 VK 394
            K
Sbjct: 64  EK 65


>SB_45871| Best HMM Match : ABC_tran (HMM E-Value=2.5e-08)
          Length = 435

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 200 HECSPSMMSTADKSFYGTHEQCQSNEDIFNCEEEIDENLERAPTSMLP-DEDDPLSP 367
           H+C+   ++   + F+G  E  +   +  +   E DE    A + +L  D+D+PL P
Sbjct: 174 HDCNSDEIAENYRKFHGIVETSKEETEEEHAAPEADERRSLAASEILSVDDDEPLIP 230


>SB_15869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1420

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/48 (20%), Positives = 21/48 (43%)
 Frame = +2

Query: 170  HHLFSSLGMLHECSPSMMSTADKSFYGTHEQCQSNEDIFNCEEEIDEN 313
            H + +S   L     +++   +K   G   QC+   ++F C    ++N
Sbjct: 1170 HEINASAATLDNLGRALVKNLEKDSLGAETQCKLQRNVFKCHHNENKN 1217


>SB_13745| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 301

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +2

Query: 65  VSVDEYNANPQRGNAFSFLGKRGLDITKAANSGDDHHLFSSLGM-LHECSPSMMSTADKS 241
           V+ D Y A    G      G +   I  A N   +  +F  + +  H+C PS+ ++A + 
Sbjct: 146 VAPDLYIAVGISGAIQHLAGMKDSKIIVAINKDPEAPIFQVVSLKCHKCPPSVHTSAREC 205

Query: 242 FYGTHEQCQSNE 277
             G  + C+S++
Sbjct: 206 LAGPLQHCKSHD 217


>SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2309

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 20/83 (24%), Positives = 32/83 (38%)
 Frame = +2

Query: 182  SSLGMLHECSPSMMSTADKSFYGTHEQCQSNEDIFNCEEEIDENLERAPTSMLPDEDDPL 361
            SS G   E S    S++D       +    +   FN +  IDE+ +R+    + D D P 
Sbjct: 1549 SSDGESEEVSSDNESSSDLLMSFLTKSADKSSVDFNSDIGIDESDDRSSPGQISDSDSPC 1608

Query: 362  SPENLVQDNVKHFCRLMKFANGH 430
                    N+K    + K  + H
Sbjct: 1609 KRTKSSSQNLKGTKSIEKKCDSH 1631


>SB_1699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 254 HEQCQSNEDIFNCEEEIDENLERAPTSMLPDEDDPLSPENLVQD 385
           + Q  S  D  +  E  D++ E   T   P ED+PL+    ++D
Sbjct: 221 NNQAFSESDEGHLSEVSDDSTEEYSTGFAPYEDEPLARPGTIED 264


>SB_54973| Best HMM Match : RVP (HMM E-Value=2.6)
          Length = 255

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +2

Query: 269 SNEDIFNCEEEIDENLERAPTSMLPDEDDPLSPE--NLVQDNVKHF 400
           +++ I + + E+D ++ + P S  PDE D   PE   ++  +  HF
Sbjct: 118 NHQSILDMDFEMDNSILQQPMSPSPDETDDNLPEINTIINTSNSHF 163


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,852,737
Number of Sequences: 59808
Number of extensions: 299647
Number of successful extensions: 892
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)