Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0206
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    27   1.2  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    27   1.2  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    25   6.6  

>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 205 WNYVNCCELFVYWILCTN 258
           W  +N  E F+YW  CTN
Sbjct: 196 WPMMNLQETFIYWDRCTN 213


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 101 VL*ENNELFVWDTSCVISYDYLVIYEDFITSTNS 202
           V+ ++ +   +D   + +YDYL +Y D IT  NS
Sbjct: 430 VVSQSGQFAPFDFFWLPNYDYLAVYNDSITHMNS 463


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
          subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 7/24 (29%), Positives = 17/24 (70%)
 Frame = +2

Query: 2  FFEALYLIFLT*LLSHTQHMIHNL 73
          F+E  ++IF+  +L H+ +++H +
Sbjct: 19 FYETRHIIFMDAILRHSAYVLHKI 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,731,907
Number of Sequences: 5004
Number of extensions: 32569
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)