Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0206
         (433 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0072 + 9605273-9606814,9616982-9617016,9617271-9617348,961...    27   8.6  

>11_03_0072 +
          9605273-9606814,9616982-9617016,9617271-9617348,
          9617427-9617501,9617583-9617657,9617731-9617977,
          9618070-9618313,9618852-9619309,9619388-9619675,
          9619751-9619788,9619882-9620452
          Length = 1216

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -2

Query: 60 MCCVCDKSQVKKIKYSASK 4
          +CC C+K +++K KYSAS+
Sbjct: 35 ICCPCNKCKIQK-KYSASR 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,222,007
Number of Sequences: 37544
Number of extensions: 177669
Number of successful extensions: 259
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)