Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0206
         (433 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49175| Best HMM Match : RVT_1 (HMM E-Value=1.8e-32)                 28   3.8  
SB_17257| Best HMM Match : rve (HMM E-Value=8.3e-08)                   27   5.0  
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_46457| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_49175| Best HMM Match : RVT_1 (HMM E-Value=1.8e-32)
          Length = 823

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 352 TTFPRSQHQDRFLCWQTSKDSS 417
           TT PR+ H D+  CW   +DS+
Sbjct: 685 TTPPRASHYDQPWCWTAERDSA 706


>SB_17257| Best HMM Match : rve (HMM E-Value=8.3e-08)
          Length = 962

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 149 LHTMYPKRIIHYFLRERM*TRNFGLTDCVSC 57
           LH M P   +HY  + +  ++ + +TDC  C
Sbjct: 6   LHKMKPTETVHYTKQNKSKSKPWQITDCKYC 36



 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 149 LHTMYPKRIIHYFLRERM*TRNFGLTDCVSC 57
           LH M P   +HY  + +  ++ + +TDC  C
Sbjct: 233 LHKMKPTETVHYTKQNKSKSKPWQITDCKYC 263


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 283 VIVPQINQTFPVIVNRHKDLLQMTTFPRSQHQ 378
           VI+   ++   VI+N HK L+ +TT P+  H+
Sbjct: 381 VIIINNHKLLTVIINTHKLLIVITTHPQVTHR 412


>SB_46457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 288

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 149 LHTMYPKRIIHYFLRERM*TRNFGLTDCVSC 57
           LH M P + +HY  + +  ++   +TDC  C
Sbjct: 101 LHKMEPTKTVHYTKQNKSKSKPRQITDCKYC 131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,583,804
Number of Sequences: 59808
Number of extensions: 233843
Number of successful extensions: 427
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)